Basic Information

Insect: Cydia fagiglandana
Gene Symbol: -
Assembly: GCA_963556715.1
Location: OY750809.1:14609882-14612598[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.03 1.9 10.1 0.1 5 23 357 375 356 375 0.97

2 12 0.081 5.2 8.7 0.2 1 23 381 403 381 403 0.90

3 12 3.8 2.4e+02 3.5 0.3 3 23 412 432 410 432 0.85

4 12 1.9e-06 0.00012 23.3 0.7 2 23 438 459 438 459 0.98

5 12 0.0049 0.31 12.6 4.3 1 23 465 487 465 487 0.98

6 12 0.00026 0.017 16.6 0.2 1 20 491 510 491 512 0.94

7 12 0.00044 0.028 15.9 0.0 1 23 545 568 545 568 0.95

8 12 0.00056 0.036 15.5 0.2 3 23 577 597 576 597 0.99

9 12 5.3e-05 0.0034 18.7 0.2 1 23 608 630 608 630 0.98

10 12 0.00021 0.013 16.9 6.7 1 23 636 658 636 658 0.98

11 12 0.0048 0.31 12.6 0.3 3 23 666 686 664 686 0.98

12 12 5.2e-05 0.0034 18.8 0.9 1 23 692 715 692 715 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.03	1.9	10.1	0.1	5	23	357	375	356	375	0.97
2	12	0.081	5.2	8.7	0.2	1	23	381	403	381	403	0.90
3	12	3.8	2.4e+02	3.5	0.3	3	23	412	432	410	432	0.85
4	12	1.9e-06	0.00012	23.3	0.7	2	23	438	459	438	459	0.98
5	12	0.0049	0.31	12.6	4.3	1	23	465	487	465	487	0.98
6	12	0.00026	0.017	16.6	0.2	1	20	491	510	491	512	0.94
7	12	0.00044	0.028	15.9	0.0	1	23	545	568	545	568	0.95
8	12	0.00056	0.036	15.5	0.2	3	23	577	597	576	597	0.99
9	12	5.3e-05	0.0034	18.7	0.2	1	23	608	630	608	630	0.98
10	12	0.00021	0.013	16.9	6.7	1	23	636	658	636	658	0.98
11	12	0.0048	0.31	12.6	0.3	3	23	666	686	664	686	0.98
12	12	5.2e-05	0.0034	18.8	0.9	1	23	692	715	692	715	0.96

Sequence Information

Coding Sequence: ATGGATACGTGGTCTAGTTTGTGCCGTTGCTGCCTGTCGCCCGAATCTGAAGTGTCACTTTTCGATAATGAGAAAAATGTGAAAGAGAAATTTTTGGAAATCACTACAATCGAGGTGAACACGGATGATGGGCTGCCGCAGAAGCTGTGCGGCCAGTGCTACGAGACCCTCAGCTCTGCCTACCAGTTCCGGAAGCAATGTATCAGGATGGAGTCTGAACTCAAATTACAACTAGAAGCCCTAATAACTCAGGCTGAGCAAGAAAGCCAAGCAATAGACGAGGCAGAAGGTAACGAACAGGACCAAGATGATATAGCTAACAACCCTGAAAAACAACTAGAGGATATCATCAAAAAGGAACCTACTGACAGTGATGATGACTATTACTACGTACTTGTCATTGATGATCCTAAAGATAAAGATCAAAATGAAAGCGAAGAGACTGCTATCGCTAACATCAAACAAGAGCTCATGGACCATGCAGAGGAGGTGACCGTTGAAGATAAAAATGAGGACAGCATAAACGAGCAGCAGTTTGAAATGAACCACTTTCTCATGTCAGACACCAAAGTCCCTACCAATGTGCCGGCTACCATACTTGAAAATGAGGAAGAAAGTCAAGAAAACGAACATGTTCAATTTGAAAATGCTGTAGAAGAGGAAAACCAGGATGAAACACAGGATGAACATGATTTCACCATGATTGATGCAGATGTCGAAGACTCCCAAGACAATGTCACAGACTTAGTAGATGCTATCACAGGGGAAATTGGCGGAGGTCTAACCAAAAATATTGGTAAGAACAGCTTCATTAAAATTATTGCCGCCAGCGGTAGTGACGGGACCATCTTACTCAAAGATAATGTGGCATACTTAACCGAAGCCCAGTTGGACGGAACTGAAGACGGTGAAGCCATGTCCCAAGAGGAGGAGGTGATTTTCTGTGAAGGAGATGATTCATCACAATTCCAAATACTGAAGTGTGAGGGCTCTGAGCTAGTTATAGAATATGCTGATGATGGCCAGATAGCTACTGTCTTGCAGCAAGAGGATGGCAGCTTCCTCTGTGACTGCGGAGAGCAATTTGAAGATTTAGCAGACTATGAGAAGCATCAGTACACCCACACTGCCACTGAAGAGCATATCTGCAGCCTCTGTGGCAAAGGTTTTGAGTCTGCTGAGATACTAACCGGTCACACTTTGCTCCACAATATCACAGGGCTACTTATCATGTGCCCCTTCTGCAAGCAACTCATCAGAAGAAATGCTTTGACCCAGCATATAAAATATGGACACAATAACATCAAACCACGCTGCAATGTTTGCTTAAAAACATTCGCCAATCCCAACAACTTAAAACGGCACATGATGATCCATAGTGGTATAAGGCAATTTGAATGTGATATTTGCTTCAAAAGGTTCCATCAAAAAATAACCATGCAGACTCACAGACTGACCCATATTAATCCATTTTCATGCAATGAATGTGAAGAAACCTTCCCCAGCAAATCAGAGCTGGCAACTCACAAAGAATCTAATGAATGCACAAAATCCAAAGTGAGAAAAGTCAGAGACGAACTGATGAAAACAGCAAAACATGAGATAACTACTAATCTGGGCAAACTTCTAGGTTACGCTTGTGCCTTGTGTAAGAAGATGTTCTCTGTAGAGTCCGCCTTAGAGCAACATATTGATAGTGTCCATTTGGTAGACCCAAATGAGCTGTTGTGTTCAGAGTGTGGTGAAGTCCTAACATCTAAGAAAGATATGCAGAGCCACATATTGactcataaaactataaagctTAAGAATTCGAAGAGATTCGAGTGTGGAATCTGTGGAAAGAGCTGTGCTAGTCAAGCTATGTTGGTGATGCATGAGAGAGTGCATACAAATGAACGACCATTCCCCTGCCACCTCTGTTCGCTCCGATTCAAAACCAAAACCCACTTGAGAACACATCAACTCACTCATACTAGAGAGAAGAAGTTTGGTTGTTCTGTGTGTATGAAATTCTTCGCACTCAAAGGAAATTTAGTAGTCCATCTCAGAACACATACTGGAGAACGGCCTTACATTTGCACCTTGTGCGGGGAAGCCTTTATTGATTCCAAATATTTGAAGAAGCATAAGTTAAAGAAGCATGCAATACAAAATGTTCCTTGGAACAAGTACTGA
Protein Sequence: MDTWSSLCRCCLSPESEVSLFDNEKNVKEKFLEITTIEVNTDDGLPQKLCGQCYETLSSAYQFRKQCIRMESELKLQLEALITQAEQESQAIDEAEGNEQDQDDIANNPEKQLEDIIKKEPTDSDDDYYYVLVIDDPKDKDQNESEETAIANIKQELMDHAEEVTVEDKNEDSINEQQFEMNHFLMSDTKVPTNVPATILENEEESQENEHVQFENAVEEENQDETQDEHDFTMIDADVEDSQDNVTDLVDAITGEIGGGLTKNIGKNSFIKIIAASGSDGTILLKDNVAYLTEAQLDGTEDGEAMSQEEEVIFCEGDDSSQFQILKCEGSELVIEYADDGQIATVLQQEDGSFLCDCGEQFEDLADYEKHQYTHTATEEHICSLCGKGFESAEILTGHTLLHNITGLLIMCPFCKQLIRRNALTQHIKYGHNNIKPRCNVCLKTFANPNNLKRHMMIHSGIRQFECDICFKRFHQKITMQTHRLTHINPFSCNECEETFPSKSELATHKESNECTKSKVRKVRDELMKTAKHEITTNLGKLLGYACALCKKMFSVESALEQHIDSVHLVDPNELLCSECGEVLTSKKDMQSHILTHKTIKLKNSKRFECGICGKSCASQAMLVMHERVHTNERPFPCHLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYICTLCGEAFIDSKYLKKHKLKKHAIQNVPWNKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00009340;
90% Identity: iTF_00411732;
80% Identity: -