Cfag017397.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750801.1:19163383-19172953[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.2e-07 5.3e-05 24.5 4.7 1 23 247 269 247 269 0.99 2 11 0.00025 0.016 16.6 1.5 1 23 275 299 275 299 0.98 3 11 6.4e-05 0.0041 18.5 0.4 1 23 308 330 308 330 0.97 4 11 0.0015 0.094 14.2 2.0 1 23 338 360 338 360 0.97 5 11 0.0028 0.18 13.3 1.4 1 23 366 388 366 388 0.99 6 11 6.1e-05 0.0039 18.6 0.3 1 23 397 420 397 420 0.98 7 11 0.07 4.5 8.9 2.1 2 23 426 445 425 445 0.96 8 11 7.1e-06 0.00046 21.5 2.3 1 23 451 473 451 473 0.98 9 11 2.9e-05 0.0019 19.6 1.1 1 23 479 501 479 501 0.98 10 11 4e-05 0.0026 19.1 0.5 1 23 507 530 507 530 0.96 11 11 0.063 4.1 9.1 0.1 1 19 536 554 536 556 0.96
Sequence Information
- Coding Sequence
- ATGGCTAATACCAAGATTGGACGTAAAAAGAATAAAGATGATAAATCAACAGGTAAGCGAATGAAGAAGACGATGAGACTTGAAGAGGTTGAggaattgaagtttttatcCAATGAAGAAAGAATACAATATCTTGTTAAAAATGGTCACTTAATTAAAGACGAAATTTTTAATGATGTGGCgttaaagaaaaacaatttgAAAAAGGAATCATTGGTCAGAAAACCTCGAGCTAAAAATGACAAACTCATATCAAAAACTGGAAAACTCAGAAATAGAAATAAGAATATGAAGTACATGGATTCTATTTTAATGAGTGAACTGCTTATTAAACAAGCTCCTAgagctaagaaaaaaaacaatggaGATAACAATAATGATAATGAGTTAAGTGACCAAAATAACAGTGACAGCTCAAAAAgtaaaccaaaaaaaaattataggaaTATTGAAACTACACAAAATAATAGTAACATAATTCAAGTTACTATTGGCACAGACGAGGCTATTGATTTAACGGAGACAGCGCAAATAAATGTCAAAAATGAAGCAAAGATAGTTAAGCAAAAGCAGAGAAATATGGTTGAAATTAGTATCGATACAAATAATCCTGTTACTTCACAAGGCCAAAATGAAAAGAAAGCTAACGGGAAAAGAAACAATTCTATCCTCGCAGAAAGACTGGAACAAATGAAGACAGTTAAACTTAGCAATGGagtttcattttctatggaatatTATCAGTGTGACCATTGCCAAACAAAGTTCAACACAAAATCTTCTCTGCAGAGACATATGTTGATGCATCTGAATTTACAACCATACACATGCCCGGAGTGCCCCAATAGACATTTCCGGCAGCGAGGAAACTGGAGGGCACACATTCGCCGGAGACACCCACaacttttcttaaaaattaaatatgagtGCCTAGTTTGCCAAAAACCGTTCATCTCACTTGAAGACCTAAAGCGCCATAAAAAGGAGCATGTAAATGTGAAAAAGAAACAATTCACATGTGTGTTTTGTGAGAAAGTCTTTAAGGAGAAGTCACTTTTGGCAGACCATGAGAAACATCACATGTCACCAGGGCGATACAAATGCTCCATGTGCTCTATGAGCTATGACTCTCGTGTACTCTATTCTGACCATTTAAAAACGCATGCAAAAGTGGAGGATAAATTTCATTATTCTTGCCAATATTGTGGTAAATCCTATTTAAGGCCCAGTTCCATTGCAAGGCATATCCGAGTTAGCCATGGCGGCATGAGGATGCAGTGTCCAATTTGTAAAAAGTTGTTGAAAGGGCATCTAACTGAGCATATGAGAACACATGAAAATGAGAGACCGCATGAATGTGATGTGTGCGGGCAGAAATTCACTCAGTCGACCCAGCTCACGGTTCACAAGCGCTCCCATACTGGTGCTAGACCATATCCCTGCCGAATCTGTAAGCAACCTTTCTCACACTCTAACGCTCTAATGCTCCATATAAGACGGCATACTGGAGAAAAGCCATTCGCATGTGCTATGTGCCCGCAAACATTCTCTCAGCTACCACATATGAAGGCCCATATGCGCAGCATACATAGTAAATCTGAATTCTACAAATGTGCTAAGTGTAGCGCGTTCTTCAAGCTTAAGGCCCTGCTAGAAGCGCATGCAGAAGAATGCGGGGCTGTCGAGAGCCTTAAGAAACCTGAAAACAAAGACAGCACGCTGGTGTCAAAAATGAGGTTCCATCTCGCGCTACTTTTCACTATGATCGCCTCTAAAGAAAAGCTGAATGACCTAGGTTTCAACAAGCGACTCATCGACGATATCCTCGTGGACTCAATCGAGGCCATGGGCTTAGCGCCCTGCAAAGACAAGAGTTTGCCTCCGTATTCGCGTCTGAAGATCAACGCGCTTATGCTGCTGCAAGgtaCCGTGCCTAAGCCACAGATGGCGCTGTTCGTCAAGGAGGAGAAAACTACGGAGGAAATATTGGAGTTGCTGACTGATGTTATGAATTAG
- Protein Sequence
- MANTKIGRKKNKDDKSTGKRMKKTMRLEEVEELKFLSNEERIQYLVKNGHLIKDEIFNDVALKKNNLKKESLVRKPRAKNDKLISKTGKLRNRNKNMKYMDSILMSELLIKQAPRAKKKNNGDNNNDNELSDQNNSDSSKSKPKKNYRNIETTQNNSNIIQVTIGTDEAIDLTETAQINVKNEAKIVKQKQRNMVEISIDTNNPVTSQGQNEKKANGKRNNSILAERLEQMKTVKLSNGVSFSMEYYQCDHCQTKFNTKSSLQRHMLMHLNLQPYTCPECPNRHFRQRGNWRAHIRRRHPQLFLKIKYECLVCQKPFISLEDLKRHKKEHVNVKKKQFTCVFCEKVFKEKSLLADHEKHHMSPGRYKCSMCSMSYDSRVLYSDHLKTHAKVEDKFHYSCQYCGKSYLRPSSIARHIRVSHGGMRMQCPICKKLLKGHLTEHMRTHENERPHECDVCGQKFTQSTQLTVHKRSHTGARPYPCRICKQPFSHSNALMLHIRRHTGEKPFACAMCPQTFSQLPHMKAHMRSIHSKSEFYKCAKCSAFFKLKALLEAHAEECGAVESLKKPENKDSTLVSKMRFHLALLFTMIASKEKLNDLGFNKRLIDDILVDSIEAMGLAPCKDKSLPPYSRLKINALMLLQGTVPKPQMALFVKEEKTTEEILELLTDVMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00409553;
- 90% Identity
- iTF_00409553;
- 80% Identity
- -