Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419665.1:17501163-17505251[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.3e-06 0.00023 21.9 7.7 1 23 245 267 245 267 0.99

2 11 0.023 1.2 10.2 0.9 1 23 273 297 273 297 0.98

3 11 0.00087 0.047 14.6 0.4 1 23 306 328 306 328 0.95

4 11 0.00081 0.044 14.7 1.9 1 23 336 358 336 358 0.97

5 11 0.0022 0.12 13.4 1.4 1 23 364 386 364 386 0.99

6 11 4.9e-05 0.0026 18.6 0.3 1 23 395 418 395 418 0.98

7 11 0.056 3 8.9 2.1 2 23 424 443 423 443 0.96

8 11 5.7e-06 0.00031 21.5 2.3 1 23 449 471 449 471 0.98

9 11 2.3e-05 0.0013 19.6 1.1 1 23 477 499 477 499 0.98

10 11 3.2e-05 0.0017 19.1 0.5 1 23 505 528 505 528 0.96

11 11 0.024 1.3 10.1 0.4 1 19 534 552 534 554 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.3e-06	0.00023	21.9	7.7	1	23	245	267	245	267	0.99
2	11	0.023	1.2	10.2	0.9	1	23	273	297	273	297	0.98
3	11	0.00087	0.047	14.6	0.4	1	23	306	328	306	328	0.95
4	11	0.00081	0.044	14.7	1.9	1	23	336	358	336	358	0.97
5	11	0.0022	0.12	13.4	1.4	1	23	364	386	364	386	0.99
6	11	4.9e-05	0.0026	18.6	0.3	1	23	395	418	395	418	0.98
7	11	0.056	3	8.9	2.1	2	23	424	443	423	443	0.96
8	11	5.7e-06	0.00031	21.5	2.3	1	23	449	471	449	471	0.98
9	11	2.3e-05	0.0013	19.6	1.1	1	23	477	499	477	499	0.98
10	11	3.2e-05	0.0017	19.1	0.5	1	23	505	528	505	528	0.96
11	11	0.024	1.3	10.1	0.4	1	19	534	552	534	554	0.96

Sequence Information

Coding Sequence: ATGGCTAATACAAAGATTGGACGTAAAAAGAATAAAGATAATAAACCAACAGGTAAGCGAATGAAGAAGATGCGACTTGAAGAAGTTGAGGAATTGAAGTTTTTATCCCATGAAGAAAGGATACAATGTCTTATTAAAAATGGTCACTTAATTAAAGACGATATTTTTAATGATGCGGCGTTAAAGAAAAACAATTTGAAAAAGGAAGCACTGGTCAGAAAACCTCGAGCTAAAAATGACAAACTCATATCGAAAACTGGGAAACTCAAAAATAGAAATAAGCACATTAAGTACATGGATTCCATTTTAATGAGTGAACTTCTTATTCAGCAAGCTCCTAGAGCTAAGAAAAACAGTGGAAATAACAATAATGATAATGAGTTAAGTGATCAAAATAACAGTGACGGCGGAAAAAGTAAACCAAATGAAAGTGATGGAAGTATTAAAACTACGCAAAAGAATGGTGAAATAATTGTAATTATTGACACCGATGAGGCAATTGATTTAACAGAGACAGCCCAAATAAATGTCAAGAATGAAGCTAAAACTCCAGTTAAGCCAAAGCAGAGAAATATGGTTGAAATTTGTATTGATACAAATAATCCAGTTATTCCAAAAGGAAAAGATGAAAAGAAAGCTAAAGGGAAAAGAAAAAATTCTGTCCTCGCAGAAAGACTGGAACAAATGAAGACAGTTAAACTTAGCAACGGGGTTTCACTTTCCATGGAATATTATCAGTGTGACCATTGCCAAACAAAATTCTGCACAAAATCTTCTCTGAAGAGACATATGTTGATGCATATGAATTTACAACCGTACACATGCCCGGAGTGCCCCAATAGACATTTCTGGCAGCGAGGAAACTGGAGGGCACACATTCGCCGGAGACACCCACAACTTTACTTAAAAATTAAATATGAGTGCATAGTTTGCAAGAAACCATTTGTCTCTCTTGAAGACTTAAAACGCCATAAAAAAGAGCATGTAAATGTGAAAAAGAAGCGGTACACATGTGTGTTTTGCGAGAAAGTATTTAAAGAGAAGTCACTTTTGGCAGACCATGAGAAGCACCACATGTCACCGGGCCGATACAAATGCTCCATGTGCTCTATGAGCTACGACTCCCGTGTACTCTATTCTGACCATTTAAAAACGCATGCAAAAGTAGAGGATAAATTTCATTATTCCTGCCAATATTGTGGCAAATCCTACTTAAGGCCCAGTTCCATTGCAAGGCATATCCGAGTTAGCCATGGCGGTATGAGGATGCAGTGTCCAATTTGTAAAAAGTTGTTGAAAGGTCATCTAACTGAGCATATGCGAACACATGAAAATGAGAGACCGCATGAATGTGATGTGTGCGGGCAGAAATTTACACAGTCGACCCAGCTGACAGTCCACAAGCGCTCCCATACTGGTGCTAGACCATATCCCTGCCGAATCTGTAAGCAACCTTTCTCACACTCTAACGCTCTAATGCTCCATATAAGACGGCATACTGGAGAAAAACCATTTGCTTGTGCTATGTGCCCGCAAACATTCTCTCAGCTACCACATATGAAGGCTCATATGCGCAGCATACATAGTAAAACTGAATTCTACAAATGTGCTAAATGCAGCACGTTTTTCAAGCTTAAGGCTCTGCTAGAAACCCATGCAGAAGAGTGCGGGGCTGTGGAAAGCCTTAAGAAACCGGAAAGCAAAGACAGCACGCTCGTGTCAAAAATGAGGTTCCACCTCGCGCTACTTTTCACTATGATCGCCTCTAAAGAAAAGCTGAATGACCTAGGTTTCAACAAGCGACTCATCGACGATATCCTCGTGGACTCGATCGAGGCCATGGGTTTAGCGCCCTGTAAAGACAAGAGTTTACCTCCGTACTCGCGTCTGAAGATCAACGCGCTCATGCTGCTGCAAGGTACCGTGCCTAAGCCACAGATGGCGCTGTTCGTCAAGGAAGAAAAAACTACGGAGGAGATATTGGAGTTGCTGACTGATGTTATGAATTAG
Protein Sequence: MANTKIGRKKNKDNKPTGKRMKKMRLEEVEELKFLSHEERIQCLIKNGHLIKDDIFNDAALKKNNLKKEALVRKPRAKNDKLISKTGKLKNRNKHIKYMDSILMSELLIQQAPRAKKNSGNNNNDNELSDQNNSDGGKSKPNESDGSIKTTQKNGEIIVIIDTDEAIDLTETAQINVKNEAKTPVKPKQRNMVEICIDTNNPVIPKGKDEKKAKGKRKNSVLAERLEQMKTVKLSNGVSLSMEYYQCDHCQTKFCTKSSLKRHMLMHMNLQPYTCPECPNRHFWQRGNWRAHIRRRHPQLYLKIKYECIVCKKPFVSLEDLKRHKKEHVNVKKKRYTCVFCEKVFKEKSLLADHEKHHMSPGRYKCSMCSMSYDSRVLYSDHLKTHAKVEDKFHYSCQYCGKSYLRPSSIARHIRVSHGGMRMQCPICKKLLKGHLTEHMRTHENERPHECDVCGQKFTQSTQLTVHKRSHTGARPYPCRICKQPFSHSNALMLHIRRHTGEKPFACAMCPQTFSQLPHMKAHMRSIHSKTEFYKCAKCSTFFKLKALLETHAEECGAVESLKKPESKDSTLVSKMRFHLALLFTMIASKEKLNDLGFNKRLIDDILVDSIEAMGLAPCKDKSLPPYSRLKINALMLLQGTVPKPQMALFVKEEKTTEEILELLTDVMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00410579; iTF_00411744;
90% Identity: iTF_00410579;
80% Identity: -