Basic Information

Insect: Cydia fagiglandana
Gene Symbol: -
Assembly: GCA_963556715.1
Location: OY750796.1:6584045-6594560[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.017 1.1 10.9 1.0 3 23 207 228 206 228 0.96

2 23 0.41 26 6.5 0.2 1 21 616 636 616 637 0.96

3 23 9.2 5.9e+02 2.3 0.3 1 22 678 699 678 701 0.82

4 23 0.0025 0.16 13.5 0.6 3 21 712 730 710 731 0.95

5 23 0.43 28 6.5 0.2 3 23 740 761 738 761 0.91

6 23 0.017 1.1 10.9 0.5 3 23 781 802 779 802 0.97

7 23 0.0023 0.15 13.6 0.8 1 23 808 831 808 831 0.92

8 23 0.17 11 7.7 0.0 1 23 857 880 857 880 0.90

9 23 0.026 1.7 10.3 3.4 1 23 885 907 885 907 0.97

10 23 0.024 1.5 10.4 0.2 1 23 913 936 913 936 0.95

11 23 0.0032 0.2 13.2 1.3 1 23 949 971 949 971 0.97

12 23 0.002 0.13 13.8 4.0 1 23 1020 1043 1020 1043 0.96

13 23 0.0093 0.6 11.7 1.8 1 23 1114 1137 1114 1137 0.96

14 23 0.0015 0.097 14.2 2.1 2 23 1164 1186 1163 1186 0.95

15 23 0.12 7.7 8.2 0.0 3 23 1193 1214 1191 1214 0.93

16 23 0.014 0.87 11.2 0.2 1 21 1258 1278 1258 1279 0.95

17 23 0.0017 0.11 14.0 0.6 1 23 1289 1311 1289 1311 0.93

18 23 0.00015 0.0098 17.3 0.3 2 23 1403 1425 1403 1425 0.93

19 23 4.5e-07 2.9e-05 25.3 1.4 3 23 1432 1452 1431 1452 0.98

20 23 0.052 3.4 9.3 0.3 1 23 1472 1494 1472 1495 0.94

21 23 0.17 11 7.8 0.0 1 23 1517 1539 1517 1539 0.97

22 23 0.038 2.4 9.8 0.6 1 23 1545 1568 1545 1568 0.95

23 23 0.0012 0.079 14.5 0.4 1 23 1576 1599 1576 1599 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.017	1.1	10.9	1.0	3	23	207	228	206	228	0.96
2	23	0.41	26	6.5	0.2	1	21	616	636	616	637	0.96
3	23	9.2	5.9e+02	2.3	0.3	1	22	678	699	678	701	0.82
4	23	0.0025	0.16	13.5	0.6	3	21	712	730	710	731	0.95
5	23	0.43	28	6.5	0.2	3	23	740	761	738	761	0.91
6	23	0.017	1.1	10.9	0.5	3	23	781	802	779	802	0.97
7	23	0.0023	0.15	13.6	0.8	1	23	808	831	808	831	0.92
8	23	0.17	11	7.7	0.0	1	23	857	880	857	880	0.90
9	23	0.026	1.7	10.3	3.4	1	23	885	907	885	907	0.97
10	23	0.024	1.5	10.4	0.2	1	23	913	936	913	936	0.95
11	23	0.0032	0.2	13.2	1.3	1	23	949	971	949	971	0.97
12	23	0.002	0.13	13.8	4.0	1	23	1020	1043	1020	1043	0.96
13	23	0.0093	0.6	11.7	1.8	1	23	1114	1137	1114	1137	0.96
14	23	0.0015	0.097	14.2	2.1	2	23	1164	1186	1163	1186	0.95
15	23	0.12	7.7	8.2	0.0	3	23	1193	1214	1191	1214	0.93
16	23	0.014	0.87	11.2	0.2	1	21	1258	1278	1258	1279	0.95
17	23	0.0017	0.11	14.0	0.6	1	23	1289	1311	1289	1311	0.93
18	23	0.00015	0.0098	17.3	0.3	2	23	1403	1425	1403	1425	0.93
19	23	4.5e-07	2.9e-05	25.3	1.4	3	23	1432	1452	1431	1452	0.98
20	23	0.052	3.4	9.3	0.3	1	23	1472	1494	1472	1495	0.94
21	23	0.17	11	7.8	0.0	1	23	1517	1539	1517	1539	0.97
22	23	0.038	2.4	9.8	0.6	1	23	1545	1568	1545	1568	0.95
23	23	0.0012	0.079	14.5	0.4	1	23	1576	1599	1576	1599	0.96

Sequence Information

Coding Sequence: aTGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGGGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAGCCTCTCGTCCTCGCCTCAAAAATCAAGGATTGCGTGGCCGTACAAATAAACGAGAATGACGGCTTGCCATCGAATGCCTGCAGGAAATGCGTGGACAACGTCAATAACTGGCACATATTTAAGACAGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGGTGAACATAAAAAGTGAACCATTATCAGATGAGGCCTATGATGATGGAGTGGTAATTGATGGAGGTTATAATGAGgTTGCCAGTAGCAGTAAAGCGCAGCCGGAGGGCCCTCCAATCTTGGCTTCGCTGGGGCTCACACCGCGGAGTGATAAGggCGTCGAAAGCGAAAAAGACGAGGAGGAGGACGAAGATGAAGAGCTGTTGGAGCAGGCCCCGCAGCAGTATACCAAAGCCGTGCCCAACATGCCGGAAGTGTCCATCACCGTGATGCGGCCCACCGGGGAGACCCTCCACGCACGCCAGGGCATCCAGCAGCTCGCCTCCAAAGACTGCCTCGTGTGCGGCCGCGCCTACAGGTACTCCCACAACGCGCGCCGCCACGAGCTCACCTCGCACAGCTTCGACCGCTACACCAACAAAATCAACCCCCCGAGAAAACCCAACCCCACCAAACATTTGCAACCCAAGCTCAGGCTCAACCCTTTCAACCCCAAAGCGCGGCTCATGCCCAACCCCATCAGTCACAAGCAGTTCCAAAAACCGATGCCGTCTAGGATCATACCCTCGCGAGTCGTCGCTCCCCCGAAACCTATACCGATCAAGCAACCGAGCAAACCCGTTCATAACAATTTACCGTACCCCTTGCGTATAAAAGCTCTGAAGGATCTGCAAATTAAGAAGAAGGAACCGcaaatcttgaagacccttCTTACGGCTAAACCCGAGCTGTTGGTCTCCGAGCCCGAAATTATTAACTCTGCACCAGAGAGCCCGGAAACTTTAATATCGGAGCCGGAGATAGCGTCGTTCCAAGTTGAAACTATTTTGGGCGATCCTGGTTACGACCAAAATCAGGAGGAGGAGGAAGCCGATGAATCCCATAATCAAAATCAGCATTATGACACAGTCGATATGGAATCCGACAACGAGATCGAAATCGCCCGTCAACAAGAGAATGAGGGGGAAGTCGACGAGACCCAGGAGGAACATGATGGAGATGACAACATGCAACAAGATAATGAACCAATGGAAGGCATAGAAGGTGAAATTAGTGAGAACGAGAATGGGCAACATGAGGAAGATGAACATGGCGGCAGCCAAGGAGACATCACCATAGACGAACAAAATGATATTCAAGCTGAGACCGAGAGAGACAACGGTGAAAGTAACGGAGACAGAGAGGAGGAACAGGAAGACGGTAACGATGCCGAGGATAACGAAAATGAAAATGAGGAGGACGAGGATCTCCCGCCGGGCTTAGCGCCGGTTGTAGAAATCAATGAGGATATGCAGACTAATTCGTACAACAGCGAACAGAATGAAGACGAGGAAGAGGAGCTCGATGAATCAGCTGCCAACGAAACTATCGACGAAGACGTCAAGGAATATGATCCCGACAAGATCTATGTCACGAAAACGCAGAGAGATTTTATCAACAAATACAGAGATATCATACAACAGATCAACACTAAAAGATGTCTTTGCTGCGATAAGGAACATCCCCGCAGAAAAGCCGTCATACAACATTTACAGAAAAATGGACACAAAGTACCAAAGCACACATGCTATAATTGTGTTATAACTTTTGGCCATATTGGCGCATTGCTCAGTCACATGAGAGCTAACGTTTGTACGGACTTGTGGAAGGTTATTTACAACGAGGAGGGAATAACTGACGACCTGGTCATGGAAGAGCCCAAAGACAACAAGGTCCAGTATAAGGATATCTTCAATGCTAGATCGTATGCATGTAAACTGTGCCCGGCTAAATTCCAACTTAAACAGTTTATTATGAAGCACGTTCTGGATGTGCACGAGGACGGCCAGTCCCGGGTGCACATGGCCTGCGTACACTGCGGGTCCAGATTCAAAGACAGGTCCCTGTGGAAGAGGCACATCCGGAACGGGGAATGCACAGTTTACATTGCATGCGATCTATGCCCTGAGAAATTCGTCAATATGCAAGACTTCAACGACCATGCTCTACATGTTCACGCCGGCAGTTTCGATCCCGATAATCAGAAAAATTGCATCGACGGCCGCCCCACCGACTGCCCTCTATGCGGCAAGAAACACGCCAACTATCCTAACTTGGTGAAACATTTGAAGACCGCTCATAACGAGGACAGACCTCACTACTGCCAGAATTGTGATGCTAAATTCGAAACCAGCGTCGACCTGAATAAGCATATCTACGCCGAACATTCCGATAAAGTGTTAGGAGCGCAGCCCATGGAGCCCGACATGTCGCTTGTCAAGGAGGAAGCGGAGGAATACCATTACTCATGCACGGAATGTAACGCCATATTCGAAACCGTAGACGCCTGGACCGACCACCAGGTCGCGGAACACAATCAAGTCGCGCACCATTGCGACCAGTGCGAAAAGAAGTTCCTGCGCCCGTCCGAGCTGGCGGAACACAAAAATACGCATTTGAGAGTGAAGTTCTACCCCTGCAGCGTCTGCTCCAACTCCTACAGCACACCGCAGAAACTGTCCGAGCACGTCCAGCAGGCGCACCCCGGCGCCGCGGCGTTGGCCGCAGGCGATTCCGAATTCTTTTGTGATATTTGCATCAGGTCCTTCAAAAGTCGACAGGCCTACTCCAACCACATGCGCATCCACGCTAAAGTTCCCACCACGAACAGAAAACCGGGCGAGTCTAAAGGGTTCGCCCCGCAGATAATCGGAAAGCCGATCAAGCAGTTCCCCATGATCCAGACGAGCTTCGCGGCGTTCAAGCCCAACATCAACGTTCCCAACGCCCCATACTGCTGCGACATATGCGGAAAGGGCTTCATGCACAAGAAAAATATATGGAAGCATAAGAAAGTTTTGCACGCGGATATCCTCAACGAGAGGAACGACAGCGAGGAGAACACCATGCAGGCGTCCACGGAGGAGGACGAATATGTTAACGTCGACGAAAACGGTATCGCGTTGTCGACACCACAGTTCAACAGCTTCAACTTTTCAAATTTCGCTAACAACGCCCAACAACATCAACAGGCgcagccggcggcggcggcggcgcccgcgGACGCGACGCCGTTCTCGTGCGAGCTGTGCTTCAAGCGCTTCCCGCTGCGGACCAGCCTCTGGAAGCACAAGCGCGCCAAACACGGCATCATTAACGCCAGTGCGTCCGGCAACCCCGAGAACCAGGCGCAGCCGTCTCAGCCCTCCGAAGGCGGCAGATCCAGTTGCACAATTTGCAAGATAACGTTCTCAGATAAAAAATCGTACTACCGCCACAGAAAGAACGTGCACAAATCCTCGGCACAAATATGTAAAATCTGCGGGAAACCGGTGAACTCCACGTTGGAGCTGTACGAGCACTTGAAGGCCGCGCACGCTCGTGAATTACTAGGATATAACGCTAATCAGGGCACGAGTAAAGCGCAAGATATATCTCAGGAGGGCGAGGTGGAGTATGAGGCCGAACCCGAAATCGCGGACCCCAGCGCGGAGTATCAGGCTCGATACCCGTGCGACACGTGCGGGAAGCAATTCGTGGGCCTCTTGGCGCTTCAGAACCACCAGTGTATAAATCAAACTGTTTCGGAACCCCAAACGTTCGACTGCGAGATCTGTCACAAGAGTTACACGTCGATAGCCGCGCTGAAGAGTCATCGCGGCTGGCATCTCCGCTCGCCCGACGGCAAGGCCGCCGCCAACAACAGCGGCCTGTGGATGCCGCAGCACAAAGTCACCAGCAAGGTCAGCAAGCACGAGGTCGTCGACCCCTCCCAGCTCGCGAGGGTCACCCACTCCACTCCCACCGCGACCGCCACCAACAAGAGAAGACTGCCGCCGGAGGTCGAAGTGACCGTCGTCAACCCTAACAAGAAATTGAGATCCGACGATTCTATGGAGCTCGAGCAGCAGAACAGCATGCCCGGCACCCTAGAAGATAGATACTGCACCATCTGCGACAAAGAGTTTACGAAACGCGCGGCGTACCAACGCCACATGGACGAAGTTCACCAGCCAAACTCAGTGTTCTGTCCCGTGTGCGACAAGAGCTTCACGCGCAAGTCGACCCTGCTGGTGCATATGAAGAAGCACTATGGGGGCGACGGGGAGGGCAGCTCTAGTGCGATAGGGCAGGCGGAGGAGGACGCGTTCGCGTGCGACGTGTGCGGCGCGCAGTGTGGCAGCGAAGGAGCGCTGCGCGCGCACCGGGCGCGCCACCACgccgaggaggaggaggaggactcCGAGGACGACGGCAACGTGCCGATGGCGCAGCCCGGCGAGTTCACGTGCGGCCAGTGCGGCGACGGCGTGGCGACGCCGCGCGACCTGATCGCGCACCGCACCATGCACGCCACCCCCACAAAATTCTTCTGCAACATCTGCAAAGTTTACTTCGCGCGAGCCCTCGACCTGTCCTCGCACACCCGCGCGAGGCACTCCGACAACGAAAAGGTTTACTTCCCCTGTGCCATGTGCGAACGTTTCTATATGAACAAGAAGAGTTTGCAGCGGCATATTGAGATGGCTCACTGA
Protein Sequence: MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPLVLASKIKDCVAVQINENDGLPSNACRKCVDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEEVNIKSEPLSDEAYDDGVVIDGGYNEVASSSKAQPEGPPILASLGLTPRSDKGVESEKDEEEDEDEELLEQAPQQYTKAVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTSHSFDRYTNKINPPRKPNPTKHLQPKLRLNPFNPKARLMPNPISHKQFQKPMPSRIIPSRVVAPPKPIPIKQPSKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPELLVSEPEIINSAPESPETLISEPEIASFQVETILGDPGYDQNQEEEEADESHNQNQHYDTVDMESDNEIEIARQQENEGEVDETQEEHDGDDNMQQDNEPMEGIEGEISENENGQHEEDEHGGSQGDITIDEQNDIQAETERDNGESNGDREEEQEDGNDAEDNENENEEDEDLPPGLAPVVEINEDMQTNSYNSEQNEDEEEELDESAANETIDEDVKEYDPDKIYVTKTQRDFINKYRDIIQQINTKRCLCCDKEHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRANVCTDLWKVIYNEEGITDDLVMEEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVHMACVHCGSRFKDRSLWKRHIRNGECTVYIACDLCPEKFVNMQDFNDHALHVHAGSFDPDNQKNCIDGRPTDCPLCGKKHANYPNLVKHLKTAHNEDRPHYCQNCDAKFETSVDLNKHIYAEHSDKVLGAQPMEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQAHPGAAALAAGDSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGESKGFAPQIIGKPIKQFPMIQTSFAAFKPNINVPNAPYCCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMQASTEEDEYVNVDENGIALSTPQFNSFNFSNFANNAQQHQQAQPAAAAAPADATPFSCELCFKRFPLRTSLWKHKRAKHGIINASASGNPENQAQPSQPSEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQICKICGKPVNSTLELYEHLKAAHARELLGYNANQGTSKAQDISQEGEVEYEAEPEIADPSAEYQARYPCDTCGKQFVGLLALQNHQCINQTVSEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPTATATNKRRLPPEVEVTVVNPNKKLRSDDSMELEQQNSMPGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSAIGQAEEDAFACDVCGAQCGSEGALRAHRARHHAEEEEEDSEDDGNVPMAQPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVYFPCAMCERFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010410;
90% Identity: iTF_00680834;
80% Identity: -