Cfag025550.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia fagiglandana
Gene Symbol
-
Assembly
GCA_963556715.1
Location
OY750808.1:18062900-18074360[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 3.8 2.4e+02 3.5 0.3 1 23 183 205 183 205 0.94
2 24 0.046 2.9 9.5 1.9 1 23 249 271 249 271 0.95
3 24 2.6e-07 1.7e-05 26.0 0.3 2 23 357 378 356 378 0.97
4 24 3.1 2e+02 3.8 0.1 2 23 386 408 385 408 0.94
5 24 0.24 15 7.3 0.6 1 23 442 466 442 466 0.93
6 24 0.0021 0.14 13.7 7.0 5 23 475 493 474 493 0.97
7 24 0.33 21 6.8 3.9 1 23 622 644 622 644 0.96
8 24 0.00043 0.028 15.9 1.3 2 23 651 673 650 673 0.92
9 24 5.9e-06 0.00038 21.8 5.4 1 23 679 701 679 701 0.96
10 24 1.3e-05 0.00082 20.7 3.3 1 23 707 729 707 729 0.98
11 24 0.0028 0.18 13.3 0.4 1 23 735 757 735 757 0.98
12 24 7.3e-05 0.0047 18.3 2.4 1 23 763 785 763 785 0.95
13 24 0.011 0.71 11.5 2.5 1 23 791 814 791 814 0.96
14 24 2.3 1.5e+02 4.1 0.2 7 23 867 883 862 883 0.76
15 24 9.4e-05 0.006 18.0 4.5 1 23 889 911 889 911 0.98
16 24 0.0089 0.57 11.7 0.0 1 23 917 939 917 939 0.98
17 24 0.00044 0.029 15.8 1.3 1 23 944 966 944 966 0.95
18 24 0.00064 0.041 15.3 1.2 5 23 975 993 973 993 0.97
19 24 0.0028 0.18 13.3 2.0 2 23 1327 1349 1327 1349 0.96
20 24 0.00073 0.047 15.2 0.6 1 23 1355 1377 1355 1377 0.94
21 24 0.0013 0.083 14.4 0.6 2 23 1384 1405 1383 1405 0.96
22 24 0.001 0.064 14.7 0.4 1 23 1413 1435 1413 1435 0.97
23 24 0.0024 0.16 13.5 0.5 5 23 1444 1462 1441 1462 0.96
24 24 5.8 3.7e+02 2.9 2.0 3 23 1469 1492 1467 1492 0.88

Sequence Information

Coding Sequence
ATGAGTACCGGGACTGAACAGATATTTCTGCCTGATTCCGCGAGCAACTTGCCTCACGGAATCGAAATGAGGGCGATGAGGCCAGGTAATGGAGCGCCGACAATCAACACAACCAATCTTGAGAATGTGTCGGACTTCTCAAAGGTGTGTCGTGTGTGTGCGACTGTCACGGAGCTGGTGGTTCCCATCTACGGAGAAGAGGGCCTGCGCATGAACCTTGCTGATAAAATAAAGAGACATCTGCCTATCAAGGTAACGGAGAATGATGTGCTGCCCCTGGTGGTATGCTTCCAATGCACCAGCACCCTCCTGGCGACGCACGAGCTGGTGGCATGCAGCCTGCAGGCCGACGCGGCGCTGCGCACTGCATGCGCTCAGCGAGAGCGTCAGGCGCAGCAGTCCCAGCAGCGGCAGGAGCAGGCGATGGACGCGGAGGGTTTCGCAGAGGACCGACCAGACGAGGCCGTAAAATTTAAAGCGGTAGTTAAGAGCGTGCTCGTCAACTATTTCCACACCCTTAACATGGACAATGGCGACGACTGCCAGTTCGCCTGCCAGCGATGCCCGTGGAGAGGCAATTCCACACAACTACTAATAGACCATTTACACGCGCACCAAGTTAAGCCCGATACTGTTGACAGCTTCATACGACTATATATAACTTTTGAGGAACCACTAGAGTCAGATGATGATACAACAGAAGCACCATCAATGAAATTTAAGCCTCCAAAGCCTGTAGCAGCTCATTGCTGTCCGTTCTGCGACAGTATATTCTCATCAAAAGCGCGTTTAGAACTTCATATCGCTAACCATGTTGAAATCAGCGAAGATAGCGCAGTGGAGTGCTGCGGGGCGCTTTACAGCGAACGTTCTTTATTCATCCAACATGCCCTTGACAAGCACGAACGCGCTCTGCCTCCTGGAATAATATGCCGCGCTTGTGGCCTAAAAGCTGACTCGCTCGTTACTCTCTCCGAACATATCAAAAACACCCACGCCGATGATGCTATCACTCGAAAAAGAACAGATCGCAATCCTAAAAGCAAAGACCAGAAATATATCCCAACTCCGTGCCCGGATTGTGGAAAAACTTTCTCTAACAAATACAACATGGCTGTACATTTGCGATCGCATAAAGGAAAATCGGATAAAATCCAATGCGAGTTATGCAGTAAATGGTATGGTAGTCGCACCGCCTTGGTCAGCCATGTGAAGCTAGCTCATAGTGGGTTACTCCGCTTCGCTTGTGACATTTGTGGCGAATGGTTCCCTAATCGCACCGTCCGTGCCGTCCATGTCGCCTTACACACAGGGGAAAGACCGCATGTCTGTACAGTTAAGGGCTGTTCAAGTGCATATAGGAGTCGCGACTCGTTATTAAAACATTTGGACGCGCACCGAAATATGCGGACTTATGCCTGTCATTGTGGGAAGGATTTCAAGAGGAGGTGGCATTTAAAAAGACATCTGAAAACACATCAAGAAAATGGTCCATTGAAGAAAAAGGAATCTTGGGCGGGAATTACTGAAGACGGTCACGATCCCGGTGTGAATGGCGAGGCTGACGGTGATGACCGAGCCTCGAGCGACGAGGACGACCGCCCGCTCGCCTCCCTAGCTTCCGAGAAAGCTGACGCCTATGCAAACTTCTACAACGCCTTGCTAAACTTTAGAAACCATTACCTAAACGAACATGACGCTCGCTACCCAGAGTTTACAGAGTCTAGCGAAAGCGAAGCGGAGGCAAACGGATCAGACGATTATGACGACTTGTCTAAGAATAACATGCGGCGGGATCGCATGGATGAAGCCACGAGACTCGAATTAGCGAGCGCGCAGACCCGCATAAATGGCAAGACTTACTACACGTGTCGCATATGCGGCAAACATCTCAGCTCACCACACACTTACGTGTTCCACACACGAATACACACAGGCGAACGTCCATGCGTATGCCACATATGTGGGAAGCAGTTCCGAGCACCGAACGgcttacagcgccatctcgcggAAACCCACGAGCGGCGCCGCCGGCACGCGTGTCGACACTGCGATCGGACGTTTGCCAACTCGCAGAACCTAAAACAGCATATGAGGACTCATACGGGGGAGAGACCGTACTCGTGCTCGCTCTGCGGGAAACGTTTTCGTCAATCGGGGTCGCTGCACGCGCACAAGAAAACTCATGTCGCGCTGCTGCCGTTCCGCTGCGCGCACTGTCCGGCGGCGTTCCGCCTGCGGGCGGGGCTGGCCCGACACAGGCTGCGGCACTCCGGGGAACGTCCGCACAGTTGCGAGATCTGCGGTCGGTGTTTCAGGACGCGGGCGGATTTATCGGCGCACCGCACGGCGCACTCGCCGGCGCGCGCGCACTCGTGCGGCGTGTGCCGCGCCCCCTTCCGCTCGCGCCGCGCGCTGCGCCACCACGCGAGGCGGCTgcacccgccgccgccgccgccgccgccgcagatACAGGACGATATGGCGAATCGATCCTACTTCGTCCTAGCGCCATTAGACTCGCCGCAAAAAGTCGAAAACACTCAAACAGAGAAGTCGGCGGTCTCTACGCGGCGGCGGCAGCACTGCTCCGCCTGCGGGCTCGGCGTCGCGGCCGGCAACCTCGCCAGACACATACGCACCGCGCACGCGCAATCACGCCCGCACACATGTCAACAGTGCCCGGCCACCTTCTCTAGAAGAGACCATCTTAAAGACCACGAGCGCACACATGGGAACACCCGCGAATATGTCTGCGACACTTGCGGGGCCGCCTCGCGCTCGGCGGCGGCGTTACGCATGCACAAACAAAGCCACAGACATCGACTGCACGCCTGTTTGCACTGCGACGCACGATTCCGTCGCAAAGCGGAACTTACCGCGCATGTGTCGGTGCATACTGGAGAACGAGCGCATGTGTGTCAGTGCGGCAAAACCTTCCGATTACGCGCGCAGCTGACGCGCCACGAGCGCACGCACCGGGACCCGCCGCGCTACCGGCGCTGCGAGTTCTGCCCCCTCGTGGTGCTCGGCGCGCTCTACAACAGCCACCTGCTGGGCCGCCACGCCGACCTCGTGTTCCACTGCGACGAGTGCACCTCCCACCTGCTGGGCCGCCACGCCGACCTCGTGTTCCACTGCGACGAGTGCAACTCGTACGTCGCCCGCAGACAGTTCCTCGCGCACATGACCCGCCACGCGCACCAGGTATGTTACCTCACCCCTCTACAACAGCCCCCTGCTGGGCCGCCACGCCGACCTCGTGTTCCACTGCGACGAGTGCAACTCGTACGTCGCCCGCAGACAGTTCCTCGCGCACATGACCCGCCACGCGCACCAAGTGTGTTACCTCACCCCTCTACAACAGCCCCCTGCTGGGCCGCCACGCCGACCTCGTGTGTTACCTCACCCCTCTACAACAGCCACCTGCTGGGCCGCCACGCCGACCTCGTGTTCCACTGCGACGAGTGCAACTCGTACGTCGCCCGCAGGCAGTTCCTCGCGCACATGACCCGCCACGCGCACCAGTACGATGCGGAAGGGCGCCGCGCGGCCCCCaagcccgccgccgcgccgccgtaCTCCCCGCCCTCCCCCGCGCCCTGCCCCGCCGTCACCACCACCGCGGCCGCCGACTCCACCACCGCCTCCTCCTCGCCCACCTCCGACCCCTGCAGCGACGGCGACGACGAGCGGGAGGACACTCCGCCACCCGAGCCGGAGCCGAGCGACACACGTGATAATCCTCAACTAAATCCTGGCCCGGACCGGCTCAATGTGGCGACCGGGTCGAATGCATCGCCCGGCCCGAATGCAGCGGCCCGGTCGATTTCGACGCCTGAACCCGTTCAATCAAGCTCCGTGGCGATTAATGATCCTGTTGAAAATCCTGTGCCGGCTCCAATAAATCAGCCCGAGTCTAACGCGCAGGTTGAAGAAACTAATGAGTCTAAGCCCAAAAAGACGCCGGTTGTCCGCCAATGCCCCCACTGCCCTAAGACCTACACGGCTTCCTCCAGCTACTTCTACCATCTAAAGTACACGCACGGTAAGAGCCGCGAGCACGAGTGTCCCACCTGCGGCCGCCGCTTCGGCACCCGCGGCGCGCTGCGCGAACATTCCTCCCTGCACGAGCCGACGCAAGGCCTACAGTGCGAGCAGTGCGGGAAACGCTTCCGGACCAAGGCGGGTCGGTATATACACGCGCAAACGCATAAAGATGAGAAAGAAAAGAGATTTGAATGCGCTGAATGTGGACGAGCGTTCCGCTGGCGCACGGAGCTCAAACGCCACGTGACTAGACATGCTGCGAACCGTACGCACGCATGCGAGTGTGGACGCGCCTTCTCTGTGCGTGCCGATTTGTTAAGACACGCTCGCACGCACAGACGTGCTGCGCATTTGTGCCCGCACGCGGGATGCTGCGCCACGTTTGCGCAACCGCGCTACCTGCGCGCGCACGTGGCGCGCAAACACGCACCCGCGCCGGACAAGGCGCAGGCGCAGCGCAAGTCTGCGTAA
Protein Sequence
MSTGTEQIFLPDSASNLPHGIEMRAMRPGNGAPTINTTNLENVSDFSKVCRVCATVTELVVPIYGEEGLRMNLADKIKRHLPIKVTENDVLPLVVCFQCTSTLLATHELVACSLQADAALRTACAQRERQAQQSQQRQEQAMDAEGFAEDRPDEAVKFKAVVKSVLVNYFHTLNMDNGDDCQFACQRCPWRGNSTQLLIDHLHAHQVKPDTVDSFIRLYITFEEPLESDDDTTEAPSMKFKPPKPVAAHCCPFCDSIFSSKARLELHIANHVEISEDSAVECCGALYSERSLFIQHALDKHERALPPGIICRACGLKADSLVTLSEHIKNTHADDAITRKRTDRNPKSKDQKYIPTPCPDCGKTFSNKYNMAVHLRSHKGKSDKIQCELCSKWYGSRTALVSHVKLAHSGLLRFACDICGEWFPNRTVRAVHVALHTGERPHVCTVKGCSSAYRSRDSLLKHLDAHRNMRTYACHCGKDFKRRWHLKRHLKTHQENGPLKKKESWAGITEDGHDPGVNGEADGDDRASSDEDDRPLASLASEKADAYANFYNALLNFRNHYLNEHDARYPEFTESSESEAEANGSDDYDDLSKNNMRRDRMDEATRLELASAQTRINGKTYYTCRICGKHLSSPHTYVFHTRIHTGERPCVCHICGKQFRAPNGLQRHLAETHERRRRHACRHCDRTFANSQNLKQHMRTHTGERPYSCSLCGKRFRQSGSLHAHKKTHVALLPFRCAHCPAAFRLRAGLARHRLRHSGERPHSCEICGRCFRTRADLSAHRTAHSPARAHSCGVCRAPFRSRRALRHHARRLHPPPPPPPPQIQDDMANRSYFVLAPLDSPQKVENTQTEKSAVSTRRRQHCSACGLGVAAGNLARHIRTAHAQSRPHTCQQCPATFSRRDHLKDHERTHGNTREYVCDTCGAASRSAAALRMHKQSHRHRLHACLHCDARFRRKAELTAHVSVHTGERAHVCQCGKTFRLRAQLTRHERTHRDPPRYRRCEFCPLVVLGALYNSHLLGRHADLVFHCDECTSHLLGRHADLVFHCDECNSYVARRQFLAHMTRHAHQVCYLTPLQQPPAGPPRRPRVPLRRVQLVRRPQTVPRAHDPPRAPSVLPHPSTTAPCWAATPTSCVTSPLYNSHLLGRHADLVFHCDECNSYVARRQFLAHMTRHAHQYDAEGRRAAPKPAAAPPYSPPSPAPCPAVTTTAAADSTTASSSPTSDPCSDGDDEREDTPPPEPEPSDTRDNPQLNPGPDRLNVATGSNASPGPNAAARSISTPEPVQSSSVAINDPVENPVPAPINQPESNAQVEETNESKPKKTPVVRQCPHCPKTYTASSSYFYHLKYTHGKSREHECPTCGRRFGTRGALREHSSLHEPTQGLQCEQCGKRFRTKAGRYIHAQTHKDEKEKRFECAECGRAFRWRTELKRHVTRHAANRTHACECGRAFSVRADLLRHARTHRRAAHLCPHAGCCATFAQPRYLRAHVARKHAPAPDKAQAQRKSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00409511;
90% Identity
-
80% Identity
-