Cfag026066.3
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750809.1:6037096-6057100[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.1e-11 4e-08 33.8 0.1 7 48 193 236 189 236 0.84 2 5 1.2e-09 4.6e-06 27.2 0.2 13 50 236 275 234 280 0.81 3 5 5.4e-16 2e-12 47.5 0.0 7 70 278 339 274 344 0.87 4 5 2.1 7.7e+03 -2.4 0.0 22 52 865 903 863 903 0.79 5 5 0.78 2.9e+03 -1.0 0.0 21 52 914 953 912 953 0.87
Sequence Information
- Coding Sequence
- ATGTCTGACGAAATGGCGGTTAGTGATAACCAGAGTGGGGAAGAAGCAGTCGTTAATGGACCTGAAGCGTTGGCAGCGAGTGCCGAGGACGCGGCGCCGGAGGCCCCCGAGGCGCCCAGTGCGCCCGCGGACCCGGAGCCTGAAGAAACCAAGCCAATTAAACCAGAACTTGAATGGAAACCAGAAGAAGCACCAGAGCCCTCAGAAGACACAGATGACAAACGGGGTGTCAAGCGCAGGGCGTCGGAGGCTTTCAGCAATGCAGCCGGCGAAGACAAGCCCTTCAAGGGCTTTGTGAAGGTGGACCTGGATGACTCTATTGTGGAATACAAGAAAGTTTTAGACAACCTGGAGGCAGACGTGGCATTGGCCAGCAAGACCGTGGTGCCTCTCAGGACCGTGATGGGGACGCCCACAGCTCCGGCCAGGGCCAGCAAGCGGGCGAGGCAGGATACAGacGGATCGAGACCGTCATCTGCCCTGTCCTCTAGGTCAGAAGATGGTGTTTCGTCCACTGAGGTATCCTCCCCCGCGgtccgcggccgccgcgccACCACCGAGATGTCGTCGCCACTGCTCCGGGTTCCTCTCGAGAAGGGCTGGAAGCGCGAGCTGGTGTACCGAGCCGCGTTGGATCAGCACTCGCGACGCAACGCAGACATATACTATTACTCGCCGCAAGGCAAGAAGCTACGCTCCACTAGAGAGGGCTGGAAGCGCGAGCTGGTGTACCGAGCCGCGTTGGATCAGCACTCGCGACGCAACGCAGACATATACTATTACTCGCCGCAAGGCAAGAAGCTACGCTCCACTAGAGAGATGTCGCCACTGCTCCGGGTTCCACTCGAGAAGGGCTGGAAGCGCGAGCTGGTGTACCGAGCCGCGTTGGATCAGCACTCGCGACGCAACGCAGACATATACTATTACTCGCCGCAAGGCAAGAAGCTGCGCTCCACTAGAGAGGTGGCGGAACACCTCTCTGGAACCGGACTGACGTTAGACAACTTCTCATTCTTCAAGGAACCACTGGGTGTAGACGACCCCGAAAAAGAAATCATTCGTGACGCGAAACTGATGCGGAAGGCGGAGTCCCccgtggcggcggcggcgcccccCTTGGCGGAGGGCAAGCGCACGCCGAAGCCCAAGCCGCCCAAGGGCGCCAGCCCCGAGCCCAACACCCCCAAGTCGCCGCCCGCCAAGATCAAGGTGAAGTCAATGCAACCGCGCCTCAACCGcacgcccgccgcgcccgccaaGAAGCCCGCCgtccccgccgccgccgccgacaacaACAACACGCAGGCCATCAAGAAAAACAGAACGGCGCCGCCTGCCCCCGCCGTGTCGGCGCCAGCCGCTCCAGTACCGGTACCGATCCCGGTACCGGTCGCTCCAGTACCGGTACCAGTCGCTCCAGTACCGGTACCTGTCGCTCCGGTACCGGTACCGGTCATCCCGGTCCCGGTACCGGTGCCCGTGCCGGTGGccccggcgccgccgccgctgcagAGCCGCCCGCCCGTGTCGCCGGTTGATGCCAAGATTGAACAGCATGACTTGACCTCACCCCGACAGTTGGTGCAACCATGCTCCATGACATGTGGTCGCGGAGTGCCCACGCTGGCCTGCGGGCTGTGTCTGTGCCTCTACCACCCCGCCTGCGCCGGCCTCACTGCCCCTAGACCAGAGGGGACCTTCTTCTGCAAGAACTGCCGCAAGTCCAGTTCGCCGTCGTCCCCCCCGCCGCCGCTGACGCACAAGTCGGGGCTGACGTCGCTGGTGGCGCCGGCCGCGCGCCGCCCCGCGCTCCCCCTgcccccgcccgcgcccgcgctgctgccgcgcgcgcgccccgccgccgcccccgccgccgccgccccgcAGCCGGCAGACAAACGAGTCACGCTCAGAATGAAGATGGCGGGCGGTCCGGACGGAGCTCGCGTGTGGGCGGTGTCACCTGCGCGTGGCTCGCTGCCGCAGTCGCTGGCTGTGCTCAACGGCCGCCGCTTCATCGTGGTGCCGCGCGCTATAGTGCAGCCTGCTCCTGACTCAAAGCCAGTGCGTGGTCGAGTGGCAAACGGCGCCGCGCCGTCGCCCACCACCGACTCGCCGCGGCGAAGAGGAAGACCCAGGCTGGAGGAGAACATCGACCACTTCACAGGCTTCTGCCAGAAGGCGAAGGAACACAACTATAATGTGGCTGTACAGACGCCTACCTACTCGCCGCGGCGAAGAGGAAGACCCAGGCTGGAGGAGAACATCGACCACTTCACAGGCTTCTGCCAGAAGGCGAAGGAACACAACTATAATGTGGCTGTACAGACGCCTACCTACTCGCCGCGGCGAAGAGGAAGACCCAGGCTGGACGAGAACATCGACCACTTCACTGGCTTCTATCAGAAGGCGAAGGAACACAACTATAATGTGGCTGTACAGATATTCCAGTACCTGGGCATGCGTGACTTGGCGCATTGTGCGCGCGTGTGCCGACTGTGGCGGGATCTGGCGGCCACGCCACAGCTCTGGCGGCACGTCAGGATGAAAAATTCACacGTGAGCGACTGGGGAGGCCTATTCGCGGCCCTCCGGCGGCACGGCACGAAGAGGCTGGACCTGCGCAAGATGCTGCTGCCGCAGAACGACGCCGTGTTCTGGGAGCAGTTCGGAGAGCATGTCAAACAGCTGGACGAGCTAGAGAGGTATGACTATACTGTACTGGGCCTATTCGCGGCCCTCCGGCGGCACGGCACGAAGAGGCTGGACCTGCGCAAATTGCTGCTGCCGCAGAGCGACGCCGTGTTCTGGGAGCAGTTCGGAGAGCATGTCAAACAGCTGGACGAGCTAGAGAGGTATGACTATACTGTACTGGGCCTATTCGCGGCCCTCCGGCGGCACGGCACGAAGAGGCTGGACCTGCGCAAGATGCTGCTGCCGCAGAGCGACGCCGTGTTCTGGGAGCAGTTCGGAGAGCATGTCAAACAGCTGGACGAGCTAGAGAGGGATAAAAACGATATATTTCATGTCTGTGCCGTCGGCTTGACCTGTGAGATTACGCTATTCATACAACTATCGAGAACACGAAGTACTTATGTCCCCGCGCCGTCCAGCCGCGCGCGCGCTCCTCCTCCCCCGCCGCCCCCGCCCCGCGGGGGGCCCGAGCAGAGGCGCGCGAGCGCGGTTCATCAGTACCTTGAGATTGCGAGTCGTCAAGGCATTACTTGGTCAAGCCTAGGCAAGACATGA
- Protein Sequence
- MSDEMAVSDNQSGEEAVVNGPEALAASAEDAAPEAPEAPSAPADPEPEETKPIKPELEWKPEEAPEPSEDTDDKRGVKRRASEAFSNAAGEDKPFKGFVKVDLDDSIVEYKKVLDNLEADVALASKTVVPLRTVMGTPTAPARASKRARQDTDGSRPSSALSSRSEDGVSSTEVSSPAVRGRRATTEMSSPLLRVPLEKGWKRELVYRAALDQHSRRNADIYYYSPQGKKLRSTREGWKRELVYRAALDQHSRRNADIYYYSPQGKKLRSTREMSPLLRVPLEKGWKRELVYRAALDQHSRRNADIYYYSPQGKKLRSTREVAEHLSGTGLTLDNFSFFKEPLGVDDPEKEIIRDAKLMRKAESPVAAAAPPLAEGKRTPKPKPPKGASPEPNTPKSPPAKIKVKSMQPRLNRTPAAPAKKPAVPAAAADNNNTQAIKKNRTAPPAPAVSAPAAPVPVPIPVPVAPVPVPVAPVPVPVAPVPVPVIPVPVPVPVPVAPAPPPLQSRPPVSPVDAKIEQHDLTSPRQLVQPCSMTCGRGVPTLACGLCLCLYHPACAGLTAPRPEGTFFCKNCRKSSSPSSPPPPLTHKSGLTSLVAPAARRPALPLPPPAPALLPRARPAAAPAAAAPQPADKRVTLRMKMAGGPDGARVWAVSPARGSLPQSLAVLNGRRFIVVPRAIVQPAPDSKPVRGRVANGAAPSPTTDSPRRRGRPRLEENIDHFTGFCQKAKEHNYNVAVQTPTYSPRRRGRPRLEENIDHFTGFCQKAKEHNYNVAVQTPTYSPRRRGRPRLDENIDHFTGFYQKAKEHNYNVAVQIFQYLGMRDLAHCARVCRLWRDLAATPQLWRHVRMKNSHVSDWGGLFAALRRHGTKRLDLRKMLLPQNDAVFWEQFGEHVKQLDELERYDYTVLGLFAALRRHGTKRLDLRKLLLPQSDAVFWEQFGEHVKQLDELERYDYTVLGLFAALRRHGTKRLDLRKMLLPQSDAVFWEQFGEHVKQLDELERDKNDIFHVCAVGLTCEITLFIQLSRTRSTYVPAPSSRARAPPPPPPPPRGGPEQRRASAVHQYLEIASRQGITWSSLGKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -