Cfag001554.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia fagiglandana
Gene Symbol
Gcfc2
Assembly
GCA_963556715.1
Location
OY750790.1:25319634-25333537[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.4e-11 1.3e-07 32.5 0.6 4 97 519 585 516 600 0.82
2 2 2.7e-05 0.25 11.9 0.0 127 190 624 687 604 691 0.75

Sequence Information

Coding Sequence
ATGTCATTGTTTCGTAAGCCGAAAAGGATACAAAGGCGCGTATTTTgcgttgatgatgatgatgacggtgAACCTGAGCCGCCACCACCGCCGGTCATCAGTCACGCTAAGAAGGAGAACAAACCGGTCAAGAGCACTCCACTTTTAAGTTTTGCCGATGAAGAGGAAGATGGTGAAGTATTTATTGTGAAGAAGTCATCACAAAGCAAGAGACTGGCCAAGCGTCGCGACCGGGAGAAACGACGCGCCAATGATTGTGATAATAACAAATACGACAACCACAGCAACAACGAGGAAAAGGATTCGCCGATCAGCGCCGACAAgcaagaaaaaacaaaaaagaagaaAGCTAGTTTGGAAGGACTAATACTGTCCGGAAGGGAAGCGCTGGCGGCCGACGGGTCGGGCGATGTGTCGGGCAGTGAGGAGGAGGCGGAGGAGCCGGAGGAGGAGGATAACAGGGGGTTCCACCGGTACCGCGCCGAGTCGGTGCGCGCGGCGCTGGCCGTGGCGCCCGGCCACATCCCCGACGCGGCGCTCATCCACGCGGCGCGCAAGACGAGACAGCAGGCGCGCGAGTGCGGGGACGTGATCCCCGTGGCGTCGGAGGCGGCGCCCGGCTCGCGGCTGCAGCGCGACGACGGCTCGGGCGACGACGAGGAGGAGGGCCGCCTGCTAGTGCGCGGCCTCGAACTGCCCAGCGACAAGCCTAAGCGTGGGACGGCGGCGGCGTCGGCGGAGTCAGAGCTGGACAGCGAGGGCGAGGAGTGGGCCGCGCAGCAGCTCAACAaggcgcgcggcgcgctcgccGACGGACCGGATGGCACGGAGGCGGGGCTGAACCCGTTCGCggtggcgccgccgccgccgcggctGCAGGAGGCGCCGGCGCACCTGCGGCCGCTGGCCGCGCCCGCGCAGCCGCCGCCCGCCACGCCGCAGGCGCTCCTCGACGCGCTCACTGACAGGTTGCAAGAATTAGAGACGGATCGGTCTTCGACCCTGGAAAAGAAGGAATCGTGGTCGGCGCGCCtggaggcggcggcggcgacgcgCTCGGCGTGCGGCGCGCGCACCGGCGCGCTGGACGCGGCGTACCGCCGCGCGCAGGCCGCCCGGGGCTTCCTCACCGACCTCATCGAGTGCCTCGATGAAAAGCTGCCGCTGCTGGAGGCGCTCGaggcgcgcgcgctggcgctgcACCGCCGCCGCTGCGAGTTCCTCACGGAGCGGCGCCGCGCCGACGTGCAGGACCAGGCGCTCGACACCCTTGCGCCCGCTCGCGCAGGCGCGCTGAAGCCGGCGGACTCTGAGGAGAAGATCCGTCGCACGGCGGAGCGCgaggggcggcggcgcgcgcggcggctcaagcgcgaggcggcggcggcggcggccggcGCGCCCCCGCCGCGCTCGCACCGCGACGGCGACTCCAGCGACGACGACCTGCCGCCCAGCGAGGAACACTACTACCGCCAGGAGAAAGAGAGTATCCgcgtggcggcggcggcggtgttCGCGGACGCGCTGCCGGCGTGGCGCAGCGCGCGCGGCGTGTGCGCGCGGCTGGCGCGGTGGCGGCGCCGCGACCCCGCGCTCTACGCCGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGATCGCTCCCTACGTCAGGCATCAGCTTATTCTTTGGAATCCACTCGCAGATGAAGACAACGATGACTATGAAAGGATGGATTGGTACAAATGGTTAATGATGTATGGAGTTCGAAACGAGAAGCTGTCGAGCGAGTCGGAGCAGTCAAGCGACGAGgagagcggcggcggcggcgcggcgaccGTGAGCGAGGACGGCGTGCGCGCCGACCCCGACCTAATGCTCGTGCCCGCCGTCGTCTGCGGGGTCGTGCTGCCCAAGCTGGCAGAGCTGGTTGAGGCCGCATGGGACCCGGTGTGCGTGCGCGCGTGCGTGCGGCTGCGACAGCTGGTGGTGCGCGCGTGCGCGCTGCccagcgccgcgcccgccgtgGCCCgcgtggcggcggcggcgcgcgcgcgcctgcaGCGGGCGCTCAACGCCGACGTCTTCCTGCCGCCGCTGCCCAACAACCAGGCTCTAGACGGCGCGAGCGGCGCCTTCTGGCGGCGCTGCCTTGGCGCGGGCGTGCGGTTGCTGCGCGCCGCGCTGGCGCTCAcgtcgccgccgccgctgctGCGCGCCGATGACGTCGCGCTCTCCCTCATAGAGACGCTGAGCACAGCAGCGGGCGCGTCCGCTggtccggcggcggcggcggcggccgcggcgcTGGCCGAGACGCTGCCGCGCGGCACGGGCGAGCTACGCGCGCGCGCGCTGCGTCGGCTGGCGCGCCTCGCTGCGCTCGCCATCGACCGCCTCGACCAAGCCAACCCGCTCCACATGTAA
Protein Sequence
MSLFRKPKRIQRRVFCVDDDDDGEPEPPPPPVISHAKKENKPVKSTPLLSFADEEEDGEVFIVKKSSQSKRLAKRRDREKRRANDCDNNKYDNHSNNEEKDSPISADKQEKTKKKKASLEGLILSGREALAADGSGDVSGSEEEAEEPEEEDNRGFHRYRAESVRAALAVAPGHIPDAALIHAARKTRQQARECGDVIPVASEAAPGSRLQRDDGSGDDEEEGRLLVRGLELPSDKPKRGTAAASAESELDSEGEEWAAQQLNKARGALADGPDGTEAGLNPFAVAPPPPRLQEAPAHLRPLAAPAQPPPATPQALLDALTDRLQELETDRSSTLEKKESWSARLEAAAATRSACGARTGALDAAYRRAQAARGFLTDLIECLDEKLPLLEALEARALALHRRRCEFLTERRRADVQDQALDTLAPARAGALKPADSEEKIRRTAEREGRRRARRLKREAAAAAAGAPPPRSHRDGDSSDDDLPPSEEHYYRQEKESIRVAAAAVFADALPAWRSARGVCARLARWRRRDPALYADAYVADCLPKLIAPYVRHQLILWNPLADEDNDDYERMDWYKWLMMYGVRNEKLSSESEQSSDEESGGGGAATVSEDGVRADPDLMLVPAVVCGVVLPKLAELVEAAWDPVCVRACVRLRQLVVRACALPSAAPAVARVAAAARARLQRALNADVFLPPLPNNQALDGASGAFWRRCLGAGVRLLRAALALTSPPPLLRADDVALSLIETLSTAAGASAGPAAAAAAAALAETLPRGTGELRARALRRLARLAALAIDRLDQANPLHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00680557;
90% Identity
iTF_00871307;
80% Identity
-