Camp012554.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- PRDM7
- Assembly
- GCA_948474715.1
- Location
- OX419657.1:19581490-19586906[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.26 1.6e+03 -0.2 0.1 23 44 447 468 441 476 0.85 2 6 0.0078 49 4.6 0.0 20 44 472 496 464 504 0.84 3 6 0.01 66 4.2 0.1 21 43 501 523 495 527 0.89 4 6 0.012 77 4.0 0.0 21 44 529 552 524 560 0.87 5 6 0.016 1e+02 3.6 0.0 21 43 557 579 552 588 0.85 6 6 5.9e-06 0.037 14.6 0.1 22 48 586 612 580 618 0.88
Sequence Information
- Coding Sequence
- ATGAGCGGTTTCAATCTCAGAAAGAGGGCTCGACGTGTCTGCTACTGTGAGCCAGAGGAGCCACCCTTCGATGAGTTCATTTACTGCTCTGAGTGCCGGGACTATGTGTATGAGTACTGTGCAATACACGGCCCGTTGCTAGTTATACCCGATGACAAGGTGCCCGCCGAGACGGGGCTCCCCGCGTTCGTGCCGCGCGCCGCGCTCACCGTCCCAAGAATCTTCCTGCATCTTGCCTACTCGAACATACCAGGGGCGGGGATAGGCGTGTTCAGCACGCTGACGCTGCCCAGCGGCGTGCGCTTCGGGCCCTACCGCGGCCGCCGCCTCAAGGCCTCGCTCCACTCCGGCTACGAGTGGCAGGTGTACGACCGCAACAACAAGCCTTGCCACGTGGTGGACGCGAGCGACGGCGACCGCTCCAACTGGATGCGCTACGTGAACTGCTCGCGGCGCTCCTCCGAGCAGAACCTGCTCGCCTTCCAGTACCAGGGCGAGCTCTACTACAGGACGGTGAAGATCGTGCCGCGCTTCACGGAGCTGCTGGTGTTCTGCGGCAGCGAGTTCGCCGCCCGGCTCGGCGTCGACCTGCGCCGCTACACCAAGCCCTGCCACTGCAAACACTGTAAAGCTCAACTTGGTACCAAAAACGTACCAGAGAAAATAAACAAAGAAGAAACGCGTAATGAAAAGAAGATAGAAACAGAAATGAAGTATGTTAGTTCAGGTCAAGCCAAACTTGTCACTGAAACAGAACCTGCAAAAACGAACAAACGTAAAACGCGCAATGAAAAGAAGAAAGAAACAGAAATTAAGGATGTTAGTTCAGGCCAAGCTACACTTGTCACCAACAAAGAACTTCCGAAAACTAACAAACGTAAAATGCGTAATGACGATAAGAACGAAACACAGGTAAAAGAGAGTGTCACAACAGGTAGTAAAGTCGAAACGCTACAGGAGCCTTCTTCGTCTCAAGCGGAATCACCAATAAACATGGATGTACAAGAGATTCCGACTACAAGACCTGCTGCTGATGGATCTAACACAACGGTATCGAATGCGAATAACTACAAATGTGACCAGTGTGGCAAAACATTCGATGGAAAGTCACACTTAGAGAAACACCTACATTCTCACATTGCACTGACAAAGGCTAAAACCAGCAGAGGGAAGGAATTCACGTGTAATAAATGCAGTAGCACATTTGATACTCGGCTGCTTCTACTGGAGCATGCGAAGAGCCGGCATGGCGTGGAGTACTTCACTTGCTCTGCATGTGAGTATGCAACTAGTAAGgaaggatatctacagacacatctgaggactcatactggcgtgcggccattcaaatgtgatcaatgtagcgcggcctttacccgaagcgctcacttacaaaaacataagagaacacacacaggtgagaaaccgttcaagtgcggtcagtgtagcgcagcctttaccgaaagcggtgctttacaaaggcacaaaagaacacacacaggtgagaaaccgttcaagtgcggtcagtgtagcgcggcctttacccgaagcagtaatttacaagctcacaagagaacacacacaggtgagaaaccgttcaagtgcggtcagtgtagcgcagcctttaccgaaagcggtcatttacaaaggcacaatagaacacacacaggtgagaaaccgttcaagtgcggtcagtgtactgccgcctttatcaaaagcggtaatttacaaagtcacgagagaacgcatactggccagaaaccctttgagtgcaatatctgtgactacagggctactcagtcaagtaatctaaagagacatctaatgggccggcactcgggcctaaagccgtacggctgcgagtcgtgcACTTACAGGGGTGCTACTAGAGGTCAATTAACACGGCATATGAAAACCCACCAGAAGCCAGCTTAG
- Protein Sequence
- MSGFNLRKRARRVCYCEPEEPPFDEFIYCSECRDYVYEYCAIHGPLLVIPDDKVPAETGLPAFVPRAALTVPRIFLHLAYSNIPGAGIGVFSTLTLPSGVRFGPYRGRRLKASLHSGYEWQVYDRNNKPCHVVDASDGDRSNWMRYVNCSRRSSEQNLLAFQYQGELYYRTVKIVPRFTELLVFCGSEFAARLGVDLRRYTKPCHCKHCKAQLGTKNVPEKINKEETRNEKKIETEMKYVSSGQAKLVTETEPAKTNKRKTRNEKKKETEIKDVSSGQATLVTNKELPKTNKRKMRNDDKNETQVKESVTTGSKVETLQEPSSSQAESPINMDVQEIPTTRPAADGSNTTVSNANNYKCDQCGKTFDGKSHLEKHLHSHIALTKAKTSRGKEFTCNKCSSTFDTRLLLLEHAKSRHGVEYFTCSACEYATSKEGYLQTHLRTHTGVRPFKCDQCSAAFTRSAHLQKHKRTHTGEKPFKCGQCSAAFTESGALQRHKRTHTGEKPFKCGQCSAAFTRSSNLQAHKRTHTGEKPFKCGQCSAAFTESGHLQRHNRTHTGEKPFKCGQCTAAFIKSGNLQSHERTHTGQKPFECNICDYRATQSSNLKRHLMGRHSGLKPYGCESCTYRGATRGQLTRHMKTHQKPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00409544;
- 90% Identity
- iTF_00409544;
- 80% Identity
- iTF_00409544;