Camp005791.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419679.1:9461729-9466437[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0014 8.8 7.0 0.3 13 44 167 198 161 202 0.83 2 10 0.007 44 4.8 0.1 21 43 203 225 199 230 0.90 3 10 0.0001 0.66 10.6 0.3 21 52 231 262 226 263 0.86 4 10 0.032 2e+02 2.7 0.1 22 43 286 307 280 312 0.88 5 10 0.014 91 3.8 0.1 21 43 313 335 309 341 0.89 6 10 0.00099 6.3 7.5 0.1 13 45 344 377 336 380 0.80 7 10 0.012 77 4.0 0.2 21 43 381 403 377 408 0.90 8 10 0.004 25 5.6 0.8 21 43 409 431 404 436 0.90 9 10 0.015 94 3.7 0.1 20 45 436 461 432 464 0.86 10 10 0.0084 53 4.5 0.1 21 43 465 487 457 493 0.89
Sequence Information
- Coding Sequence
- ATGTCGTTGGAAACGCGCGTGAAGTTAGAGCCCCCGGATTGTACGGAACCGGTTTTGGTAAAGGTGGAAGTGGAGTACGAGGGTCCAGATGCGGTGTACGTTAAGGAGGAGCGCCTGTGCGAGGACAGCGTCCCGTATGGTGAGGAGGGCGTCCCTTACGATGCGGACAGCGTCCCGTATGGTGCGGACGGTGACCCATACGGTGCGGACGGCGTCCCGTACGGTGCGGACAGCGTCCCCAATGATGGGACAGACGAGTCGTCCGGCCTGTACGATCACGTGGTCAAGCTTGAGCCTCCACAGCTGCAGCAATCGCAGTTTGAAGACCACAATCTTTATGGTGGGGTCGGAGTTTCGCCTGAGCACACCACAGAGGGGGTCGCAGGGGCGTCCGCGGGGAGCGGGGGGCGGGGCGAGCTCATGCTGGTGCTAGAGCCCCTTACTATGGAGGTGCACACGCAGAGGGTCAAACCTCAAGAGGAAGGCAGCGCGGGGGCGCCGGCGCCGGCCGAGCGGCGGAGGCCCAAGAAAGAGCACATATGTCCAATATGTACCAAGAACTTTAAGGACTCCACCAAACTAAAGGAGCACATGCGGTGCCACACCGGCGAGAGGCCCTACCCCTGCAACGTCTGTAACAAGGGGTTCATCAAATCCGGCGATCTGAGAAGACACGAGCGCTCGCACACGGGGGAGAAACCGTATTCCTGCAAGCTGTGCCAAAAACTGTTCTCGGAATCAACCACTTTAAGAAGACACGAACGGATTATGCATGGCGAGAGACCGGAAGACTCACAGGTGAAAAAATACAAACGATCAACCAATATCAAGGAAGATGTGACCGCCAATGTGGGCGACAAACCCTTCGCCTGTGAAGTATGCAAGAAATCGTTCATCCGGTCCTGCGATCTGAAGAGACACGAACGCTGCCACACGGGCGAAAAACCATATTCTTGCGCGATGTGTGATAAACAGTTTTCGGAATCTACCACTTTAAAAAGACACGAGCGACAGCACACCGGGGAACTGCCGAAGCCGCGCGAGAGCCTCGAGGCGAGTATAAAAGCGCGCACGTGCCAAATATGCGGGAAGCTGTTCAAGAAATCGGCTATATTAAAAAACCATTTAAGAACCCACACAGGGGAGAAGCCCTACCAGTGCGCAATGTGCGACAGATTGTTCGCACAACATTCCAACTTGAAATCACACGAACGAACGCACACCAATGAGAAACCCTACATATGTCACGTATGCAAGAAGCAGTTCTCGCAACACAGCACTCTGAGGAGACACGAGCGGACCCACAGGAACGAGAGACCATACTCCTGCGAGATATGCAACAAGACCTTCACGCAGGGCAGCACTGTGAAGAGTCATATGAGAATACACACTGGCGAGAAACCATATCAGTGCGGGGTGTGTAACAGGACGTTCACCACTTCGAGTAGTTTGAGAAAACACGAACAAACTCATACCGTGGAAACAAGCAGCGATTGA
- Protein Sequence
- MSLETRVKLEPPDCTEPVLVKVEVEYEGPDAVYVKEERLCEDSVPYGEEGVPYDADSVPYGADGDPYGADGVPYGADSVPNDGTDESSGLYDHVVKLEPPQLQQSQFEDHNLYGGVGVSPEHTTEGVAGASAGSGGRGELMLVLEPLTMEVHTQRVKPQEEGSAGAPAPAERRRPKKEHICPICTKNFKDSTKLKEHMRCHTGERPYPCNVCNKGFIKSGDLRRHERSHTGEKPYSCKLCQKLFSESTTLRRHERIMHGERPEDSQVKKYKRSTNIKEDVTANVGDKPFACEVCKKSFIRSCDLKRHERCHTGEKPYSCAMCDKQFSESTTLKRHERQHTGELPKPRESLEASIKARTCQICGKLFKKSAILKNHLRTHTGEKPYQCAMCDRLFAQHSNLKSHERTHTNEKPYICHVCKKQFSQHSTLRRHERTHRNERPYSCEICNKTFTQGSTVKSHMRIHTGEKPYQCGVCNRTFTTSSSLRKHEQTHTVETSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411723;
- 90% Identity
- iTF_00409531;
- 80% Identity
- iTF_00409531;