Camp005565.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419679.1:6545777-6553796[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.34 18 6.5 0.5 1 23 238 260 238 260 0.95 2 16 0.013 0.71 10.9 0.0 2 23 289 311 288 311 0.93 3 16 0.46 25 6.1 0.1 2 23 332 354 331 354 0.92 4 16 0.00079 0.043 14.8 2.1 2 23 360 382 359 382 0.95 5 16 0.0035 0.19 12.7 0.8 1 23 387 410 387 410 0.96 6 16 0.44 24 6.1 0.2 2 23 413 435 412 435 0.94 7 16 0.015 0.8 10.8 1.6 2 22 442 462 441 462 0.94 8 16 0.0037 0.2 12.7 0.3 1 23 523 546 523 546 0.95 9 16 0.29 16 6.7 0.0 3 23 575 596 573 596 0.93 10 16 0.042 2.3 9.3 1.0 3 23 620 642 618 642 0.95 11 16 0.00073 0.04 14.9 0.6 3 20 649 666 647 670 0.90 12 16 0.012 0.63 11.1 0.4 1 23 675 698 675 698 0.97 13 16 0.00019 0.01 16.7 0.4 2 23 704 726 704 726 0.94 14 16 5.1e-05 0.0028 18.5 4.9 1 23 730 753 730 753 0.97 15 16 0.00023 0.013 16.4 0.6 2 23 760 781 759 781 0.96 16 16 0.0037 0.2 12.7 2.3 1 23 787 809 787 809 0.97
Sequence Information
- Coding Sequence
- ATGGATTTCGATGAAATTGTAGTGAAAGAAAGCCCCGGCTTGTGCCGGTGTTGTCTTTCTGAGGGATGCTACAAAGACCTAGGATCAGAATATAGTTGGATGAGTGAAACAGAAATTTACGCCGATATGTTGCTGGAATGCTTTGATATTAGTATATCTCAACACCCGACCGGCCCCAACGGCTCCAACCGGCTGATCTGCGAGGTGTGCATCACACGGCTGCGGGATGCTTGTAACTTCAAGAAGCAAGTCCTGGAGTCGGAGAAAAAGTTTGTGGATATGGTGGGCAGAGGGGAGTTCCGACCAAAAGTGCTGCTGTACCAGACCCAGATGAAGACTGAACAGATGATGGAGCTTGAGGAGGGAACCGGCGCTGACGACAGCGGAGAGGTCGAATACCTCGAGGAGGACGCAGACTTTGTTGATGAGGATCTCCTCAAAAACGAAGAGTACGGCGAAGCCTCAGTGTCCGAGGACATCACCGTCTCCTCGCTAGCGGTGAAAGGCAAGCGCGGCCGGCCCAAGAAGACCGCCAAGCCGGAGAGGAAGGCCAAGCTGGCCAAGACCGAGGAGAAGCCCAAGAAAGCTGTTGCTAAAGATGTTAAACCGCGGAAATACAAAGGCTGCGAATCGTCCTCGATGCGACGACGCAACAACCTCGCTGTGTTGTTCAACAACACCTCGGTCGTACCCTTCAAATGGAGGGGCAAATACCTCTGCTTTTACTGCAGCAAGGACATTGCCGAATACCCCGCGCTTCGGAAACATACCAAGTCCCACGGACGTTGCTCGACCGATGATCATTCTTTGAAAGTCTTGAAAGGAGGCCAAAATATGGAAATTAAAATCGACATATCTGATATCACCTGCGAAATTTGCAACGAACCTTTTCCTACATTAGACGATATTATAACACATCTGTTTATTAAACATAAGTTAGAATATGACCGCGATGTTGAAATGGCCATAGAAGAGTATAGACTAGTCGATCTTAGCTGTTTAGCTTGCGATGAAAAATTCGCGTATTTCGGTTATCTGGTTTCTCATGTTAATAATAGTCATCCTAAAAACTGTCTCATCTGTGATAAGTGCGAGCAAAAGTTCAACAAGAAACGAGATCTGTTCTCTCACATGAAGAATTATCATAGGGAGGGAGGTTACCAATGCGAACTGTGTCCTTTAAGTTTTAGCTCACTAAATATACTTCGGAAACATAGAAACAATCGCCATTTGACTAGGTGTAGTATCTGTCAGTTGAAGCTGCCTTCAGCGGCGTTAAAACAGAAGCATATGGAGTTGGAACACCCTGACGATGGCTCTTTGCAATGCGATAACTGTTTCAAAGAATTCCACACGAAACAGGGTCTTAGAATGCACGTTAGAAAGTGCAAGGGAGATGATGAGGTTTTCAGCGTAGATGTTAGGAAAAAAGACTACGACCCAATGGATCTGGATCAGAATTACGAAGATCCTGTCAAAAGACCGAGCGTCAAGCAGATCAGGGAGAACATAGTCATAGTAATCAATATGTCGACGGCTATTCCATTCAACTTCTATAAAAATAAGTTTAACTGCTTCTATTGTTCCAAAGATTTTCCCGACTCGGATTTAATGAGAGAACATACTATAATAGAACACCCTACGTGCGATGTCAAACAGAAATGCATTAGGAAGTGTAGGGAATCGGTAGCGTGCGTCAAAATAGACATTTCTGCCCTAGCGTGTAAAGTATGCTTCGAGTCCCTCCCAGACCTTGATACACTCATAGACCATTTAATTTTAAAACACAACGCCAACTACGATAAATCAATAACGACCTGCTTACAGCCTTACAGACTCATCAAAGACCATATGGCCTGCCCCCATTGTCCAGGCGAAACATTTAGATTCTTCGGCACTCTGCTAAAACACATGAACAACAAACACACCAACAATAATATTATTTGCGTGTATTGCGGTCAAACCTTTAGACGGGACCAAAATCTTCGTGTTCATATTTGGCGCCACCACAGGGACGGTAGATTTAAGTGTAACATATGTGGCGCCGAATGTAATATACCTTCTAGGTTATACATGCATATGGCTAAAGCACACGGGGTGAAAGCGGCCAAATGCCCTAAATGCCCTGAGAGCTTTTCAACACAATACCTAAGACAAAAACATTTAATCGAGGCTCACGACTCAGGCCACAAATGTACTTATTGTGGCAAATTATTCACTAGGAACTCATTTATGAGGGACCATATTAGACGAACGCATTTAAAAGAGAAAAACGTGGAATGTTCCATAtgcaacatgaagtttttcaacaacattcttctgagacgccacatggttaaacatagcggcgagaagaattttcattgtgatatttgtGGTGAAAGATTTTTTTGGCGAAAAAGCCTACGGACGCATATGGCTAGGCATAATAAGCATATTAATCCTGTACATATTTAA
- Protein Sequence
- MDFDEIVVKESPGLCRCCLSEGCYKDLGSEYSWMSETEIYADMLLECFDISISQHPTGPNGSNRLICEVCITRLRDACNFKKQVLESEKKFVDMVGRGEFRPKVLLYQTQMKTEQMMELEEGTGADDSGEVEYLEEDADFVDEDLLKNEEYGEASVSEDITVSSLAVKGKRGRPKKTAKPERKAKLAKTEEKPKKAVAKDVKPRKYKGCESSSMRRRNNLAVLFNNTSVVPFKWRGKYLCFYCSKDIAEYPALRKHTKSHGRCSTDDHSLKVLKGGQNMEIKIDISDITCEICNEPFPTLDDIITHLFIKHKLEYDRDVEMAIEEYRLVDLSCLACDEKFAYFGYLVSHVNNSHPKNCLICDKCEQKFNKKRDLFSHMKNYHREGGYQCELCPLSFSSLNILRKHRNNRHLTRCSICQLKLPSAALKQKHMELEHPDDGSLQCDNCFKEFHTKQGLRMHVRKCKGDDEVFSVDVRKKDYDPMDLDQNYEDPVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTIIEHPTCDVKQKCIRKCRESVACVKIDISALACKVCFESLPDLDTLIDHLILKHNANYDKSITTCLQPYRLIKDHMACPHCPGETFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFSTQYLRQKHLIEAHDSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFFWRKSLRTHMARHNKHINPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00013343;
- 90% Identity
- iTF_00010459;
- 80% Identity
- -