Camp006425.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia amplana
Gene Symbol
-
Assembly
GCA_948474715.1
Location
OX419663.1:12787963-12804613[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 8.1e-05 0.0044 17.9 1.5 1 23 408 430 408 430 0.96
2 13 0.0039 0.21 12.6 0.6 1 20 436 455 436 458 0.94
3 13 2.8e-05 0.0015 19.3 4.6 1 23 481 503 481 503 0.98
4 13 0.00018 0.0096 16.8 4.7 1 23 509 531 509 531 0.99
5 13 3.5e-05 0.0019 19.0 5.3 1 23 537 559 537 559 0.97
6 13 7.5e-06 0.00041 21.1 7.1 1 23 565 587 565 587 0.97
7 13 6.7e-07 3.6e-05 24.4 2.9 1 23 593 615 593 615 0.97
8 13 9.6e-05 0.0052 17.6 6.7 1 23 621 643 621 643 0.97
9 13 1.8e-05 0.00099 19.9 6.4 1 23 649 671 649 671 0.98
10 13 4.6e-07 2.5e-05 24.9 1.9 1 23 677 699 677 699 0.98
11 13 4.7e-05 0.0025 18.6 7.9 1 23 705 727 705 727 0.98
12 13 0.0019 0.1 13.6 7.1 1 20 733 752 733 761 0.93
13 13 4.4e-05 0.0024 18.7 3.4 1 21 767 787 767 787 0.96

Sequence Information

Coding Sequence
ATGAATACGGAGCATCACAATATCAACACGGGTGGCGGCCAGCCCCCAGGAAATTCAGAGCAGCAGCAGCAGACTGCGAATTTGACCCCTACGACGTCCGCTACCGACCTGCGAGTGAACTCTGCGGCAGTAAACGTCGCTTTGTCGAGCGTCGCGAAGTACTGGGTGTTTACAAATCTCTTCCCGGGACCGATACCGCAAGTGTCGGTGTACGGTCTGCCCACGGGTACGAGGATAGAAAATGGGAAACCAGTGCAGGATCTTGGTCAAGCCCATGCAAGTATACTCAATGGAGACCCCAACATTATACTTGGGCACCCGGGACAGACCCAAGTTACTGTCTCGGCTGCGCAACAGTTACCACAGATCATTGCCACTCAGACACAAACACACGATGCCCTGGCCCATGCTCAGCAACAAGAACTGGCCCAGCAGCAGGCAACTGGTCAGGTCACAACTAACTCGGGTCAATCCCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTCCACCATAACATTGATATGGTAAATCACGTGGGGCATCACTCGCAGCAACACATAATGCAGCAACAGCTAATGGCAGCGACAAGGCCAGAACACTCTAACCAGCAGATCCAGCTAACAGTGAGTGAAGATGGCATCGTCACCGTGGTAGACCCGGGCGGCGGCAAGCTGGTCGACAAGGAAGAGCTGCATGAAGCTATCAAGATGCCTTCAGACCAGCACACGCTCACCGTGCACCAGCTGCAGCAGATTGTGGGGCAACAGGTGTTAGAGAACGTAGTCCGCATCGAACAAGCCACGGGCGAGCCTGCCAACATCCTCGTCACACAGAACCCGGACGGCACCACGTCCATAGAGGCCAGCGCCGCGGACCCCCTGTCCATTGTCAAAGACGAGAAGGGAGGCTCCAAGATAGAAACGGCCCACTTCGCGCTGCCTGCTGAGATAAAGGACCTTAAGAGCATTGATTTAAAGAGTGTGGGGGCGATGGGTATGGAAGGAGCAGTAGTGAAGATATCCGCGGGAGCGGCGGACCACGACATGCACGCCATGTACAAAGTCAACGTCGAAGATCTATCGCAGCTGCTCGCTTACCACGAGGTCTTCGGCAAACTTAACGCTGACGGACAGCCCCAAGCCAAAGTGATAAGTGAAGTGGAAGTAGAAGCGGGAACCAGCGCCGCCATGTCCGCCGAGGAGAACTCGCCCGGACACCATGCCTGTGATATTTGTGGGAAGATATTCCAGTTCCGGTATCAACTCATTGTTCACAGACGATATCATGGCGAAAGAAAACCTTTCACGTGTCAAGTATGCGGATCGGCCTTCGCTAACCCCGTGGAGCTGTCAAGGCACGGGAAATGCCACCTTGGCGTCATTACAGCAGGAGACTCGGCGGACAGGACCGCCAAGCGGCTGACGCAGGACAAGCCGTACGCGTGCACGACGTGCCACAAAACGTTCGCGCGCAAGGAGCACCTCGACAACCACGTGCGCAGCCACACTGGGGAGACGCCGTACAGATGTCAATTCTGCGCAAAGACTTTCACCCGAAAAGAGCACATGGTAAACCATGTCCGCAAACACACGGGGGAGACTCCTCACCGGTGCGACATCTGCAAGAAGAGCTTCACCAGGAAGGAGCACTTTATGAACCATGTCATGTGGCACACAGGTGAAACTCCACACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCACTTAGCAAACCATATGAGATCACATACAAACGATACCCCGTTCCGCTGCGAACTCTGTGGGAAGTCTTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACCGGCGAAACCCCCCACCGCTGCGACTTCTGCTCAAAAACTTTTACCCGCAAGGAGCATTTACTGAACCACGTTCGGCAACACACGGGCGAGTCTCCGCACCGCTGCAATTACTGCTCCAAGTCCTTCACGCGGCGGGAGCATCTGGTCAACCACGTGCGCCAGCACACCGGAGAAACGCCCTTCCAGTGCGGATACTGTCCCAAGGCCTTCACAAGGAAGGATCACTTAGTAAACCACGTGCGCCAGCACACCGGCGAGTCTCCCCACAAGTGCTCGTTCTGCACCAAGTCGTTCACACGCAAGGAGCACCTCACCAACCACGTGCGGCAACACACGGGCGAGTCGCCGCACCGCTGCACATACTGCGCCAAGTCGTTCACCAGGAAGGAGCATCTCAACAACCATGAGTACCTGACCAACCACGTGCGGCAACACACGGGCGAGTCGCCGCACCGCTGCACATACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCAACAACCATGTCAGGTGA
Protein Sequence
MNTEHHNINTGGGQPPGNSEQQQQTANLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHPGQTQVTVSAAQQLPQIIATQTQTHDALAHAQQQELAQQQATGQVTTNSGQSHQQVPNNRVEFVHHNIDMVNHVGHHSQQHIMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPSDQHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLSIVKDEKGGSKIETAHFALPAEIKDLKSIDLKSVGAMGMEGAVVKISAGAADHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVISEVEVEAGTSAAMSAEENSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLGVITAGDSADRTAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHEYLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00342419;
90% Identity
iTF_00342419;
80% Identity
-