Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419660.1:14446301-14455316[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.01 0.55 11.3 0.6 3 23 206 227 205 227 0.96

2 23 0.32 18 6.5 0.2 1 21 615 635 615 636 0.96

3 23 7.4 4e+02 2.3 0.3 1 22 677 698 677 700 0.82

4 23 0.002 0.11 13.5 0.6 3 21 711 729 709 730 0.95

5 23 0.34 19 6.5 0.2 3 23 739 760 737 760 0.91

6 23 0.013 0.71 10.9 0.5 3 23 780 801 778 801 0.97

7 23 0.0019 0.1 13.6 0.8 1 23 807 830 807 830 0.92

8 23 0.14 7.4 7.7 0.0 1 23 856 879 856 879 0.90

9 23 0.021 1.1 10.3 3.4 1 23 884 906 884 906 0.97

10 23 0.019 1 10.4 0.2 1 23 912 935 912 935 0.95

11 23 0.0025 0.14 13.2 1.3 1 23 948 970 948 970 0.97

12 23 0.0016 0.086 13.8 4.0 1 23 1019 1042 1019 1042 0.96

13 23 0.0074 0.4 11.7 1.8 1 23 1112 1135 1112 1135 0.96

14 23 0.0012 0.065 14.2 2.1 2 23 1163 1185 1162 1185 0.95

15 23 0.096 5.2 8.2 0.0 3 23 1192 1213 1190 1213 0.93

16 23 0.011 0.59 11.2 0.2 1 21 1257 1277 1257 1278 0.95

17 23 0.0013 0.073 14.0 0.6 1 23 1288 1310 1288 1310 0.93

18 23 0.00012 0.0066 17.3 0.3 2 23 1402 1424 1402 1424 0.93

19 23 3.6e-07 2e-05 25.3 1.4 3 23 1431 1451 1430 1451 0.98

20 23 0.062 3.4 8.8 0.1 1 23 1471 1493 1471 1494 0.94

21 23 0.1 5.5 8.1 0.0 1 23 1515 1537 1515 1537 0.98

22 23 0.03 1.6 9.8 0.6 1 23 1543 1566 1543 1566 0.95

23 23 0.00098 0.053 14.5 0.4 1 23 1574 1597 1574 1597 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.01	0.55	11.3	0.6	3	23	206	227	205	227	0.96
2	23	0.32	18	6.5	0.2	1	21	615	635	615	636	0.96
3	23	7.4	4e+02	2.3	0.3	1	22	677	698	677	700	0.82
4	23	0.002	0.11	13.5	0.6	3	21	711	729	709	730	0.95
5	23	0.34	19	6.5	0.2	3	23	739	760	737	760	0.91
6	23	0.013	0.71	10.9	0.5	3	23	780	801	778	801	0.97
7	23	0.0019	0.1	13.6	0.8	1	23	807	830	807	830	0.92
8	23	0.14	7.4	7.7	0.0	1	23	856	879	856	879	0.90
9	23	0.021	1.1	10.3	3.4	1	23	884	906	884	906	0.97
10	23	0.019	1	10.4	0.2	1	23	912	935	912	935	0.95
11	23	0.0025	0.14	13.2	1.3	1	23	948	970	948	970	0.97
12	23	0.0016	0.086	13.8	4.0	1	23	1019	1042	1019	1042	0.96
13	23	0.0074	0.4	11.7	1.8	1	23	1112	1135	1112	1135	0.96
14	23	0.0012	0.065	14.2	2.1	2	23	1163	1185	1162	1185	0.95
15	23	0.096	5.2	8.2	0.0	3	23	1192	1213	1190	1213	0.93
16	23	0.011	0.59	11.2	0.2	1	21	1257	1277	1257	1278	0.95
17	23	0.0013	0.073	14.0	0.6	1	23	1288	1310	1288	1310	0.93
18	23	0.00012	0.0066	17.3	0.3	2	23	1402	1424	1402	1424	0.93
19	23	3.6e-07	2e-05	25.3	1.4	3	23	1431	1451	1430	1451	0.98
20	23	0.062	3.4	8.8	0.1	1	23	1471	1493	1471	1494	0.94
21	23	0.1	5.5	8.1	0.0	1	23	1515	1537	1515	1537	0.98
22	23	0.03	1.6	9.8	0.6	1	23	1543	1566	1543	1566	0.95
23	23	0.00098	0.053	14.5	0.4	1	23	1574	1597	1574	1597	0.96

Sequence Information

Coding Sequence: ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGGGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAGCCTCTCGTCCTCGCATCAAAAATCAAGGATTGCGTGGCCGTACAAATAAACGAGAATGACGGCTTGCCATCGAATGCCTGCAGGAAATGCGTGGACAACGTCAATAACTGGCACATATTTAAAACAGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGGTGAACATAAAAAGTGAACCTTTATCAGATGAGGCCTATGATGATGGAGTGGTTATTGAAGGAGGTTATAATGAGGTTGCCAGTAGCAGTAAAGCACATCTGGCAGGCCCTCCAATCTTGGCTTCACTGGGGCTCACTCCGCGGAGTGATAAGGGTGTCGAGAGCGAAAAAGACGAGGAGGACGAAGACGAAGAGATGATGGAGCAGGCCCAGCAGCAGTATACCAAAGCCGTGCCCAACATGCCGGAGGTGTCCATCACCGTCATGCGGCCCACCGGGGAGACTCTCCACGCCCGCCAGGGCATCCAGCAGCTCGCCTCCAAGGACTGCCTAGTGTGCGGCCGCGCCTACAGGTACTCACACAACGCACGTCGCCACGAGCTCACCGCCCACAGCTTCGACCGCTACACCAACAAAATTAACCCTCCCAAGAAACCCAACCCCATCAAACATTTGCAACCCAAGCTCAGACTCAACCCGTTCAACCCCAAAGCGCGACTCATGCCCAACCCCATCAATCACAAGCAGTTCCAAAAACCGATGCCGTCTAGGCTCATGCCCTCGCGAGTCGTCGCTCCCCCGAAACCTATACCGATCAAGCAACCGAGCAAACCCGTTCATAACAACTTACCGTACCCCTTGCGTATAAAAGCACTGAAGGATCTGCAAATTAAGAAGAAGGAACCGCAAATCTTGAAGACCCTTCTCACGGCTAAACCCGAGCTGTTGGTCTCCGAGCCCGAAATTATTAACTCGGGACCGGAGAGCCCGGAAACTTTAATATCGGAGCCCGAGATAGCATCATTCCAAGTTGAAACTATTTTGTCCGAACCTTGTTACGACCAAAACCAGGAGGAGGAGGAAGCCGATGAATCCCATAATCAAAACCAGCATTATGACACAGTCGATATGGAATCCGACAACGAGATCGAAATCGCCCGCCAACAAGAGAATGAGGGGGAAGTCGATGAGACCCAGGAGGAACATGACGGAGATGACAACATGCAACAGGATAATGAACCAATGGAAGGCATAGAAGGTGAAATGAGTGAGAACGAGAATGGACAACAGGAGGAAGATGACGAACACGGCGGCAGCCAGGGAGATATCACGATAGACGAACAAAATGATATTCAAGCTGAGGCTGAGAGAGACAATGGTGAAAGTAATGGAGACAAAGATGAGGAACAGGAAGACGGTAACGATGCCGAGGATAACGAAAATGAAAATGAGGAGGACGAGGATCTCCCGCCGGGCCTAGCGCCGGTTGTAGAAATCAACGAGGATATGCAGACTAATTCGTACAACAGCGAACAGAATGAAGACGAAGAGGAGCTCGATGAATCTGCTGCCAACGAAACGATCGACGAAGACGTGAAGGAATATGATCCCGACAAGATCTACGTCACGAAAACGCAGAGAGATTTTATCAGCAAATACAGAGATATCATACAACAGATCAACACTAAAAGATGTATTTGCTGCGATAAGGAACATCCCCGCAGAAAAGCCGTCATACAACATTTGCAGAAAAATGGACACAAAGTACCAAAGCACACATGCTATAATTGTGTTATAACTTTTGGCCATATTGGCGCATTGCTCAGTCACATGAGAGCTAACGTTTGTACGGACTTGTGGAAGATCATTTACAATGAACAGGGAATAACTGACGACCTGGTCATGGAAGAGCCCAAAGACAACAAGGTCCAGTATAAGGATATCTTCAATGCTAGATCGTATGCATGTAAACTCTGCCCGGCTAAATTCCAACTTAAACAGTTTATTATGAAGCACGTTCTGGATGTCCATGAGGATGGCCAGTCGCGGGTTCAGATGGCCTGCGTACACTGCGGGTCCAGATTCAAAGACAGGTCCCTGTGGAAGAGGCATATTCGGAACGGGGAATGCACAGTTTACATCGCATGCGATCTATGCCCTGAGAAATTCGTCAATATGCAAGACTTCAACGATCATGCTCTACATGTTCACGCCGGCAGTTTCGATCCCGACAATCAGAAAAATTGCATCGACGGCCGCCCCACCGACTGCCCTCTGTGCGGCAAGAAACACGCCAACTATCCTAACCTGGTGAAACATTTGAAGACCGCTCATAACGAGGACAGACCTCACTACTGCCAGAATTGTGACGCTAAATTTGAAACCAGCGTGGACCTGAATAAGCATATCTACGCCGAACATTCCGATAAAGTATTAGGAGCGCAGCCCATCGAGCCCGACATGTCGCTCGTCAAGGAGGAAGCGGAGGAATACCATTACTCGTGCACGGAATGTAACGCCATATTCGAAACCGTAGACGCCTGGACCGACCACCAGGTCGCGGAGCACAATCAAGTCGCGCACCACTGCGACCAGTGCGAAAAGAAGTTCCTGCGCCCGTCCGAGCTGGCGGAACACAAAAATACGCATTTGAGAGTGAAGTTCTACCCCTGCAGCGTCTGCTCCAACTCCTACAGCACGCCGCAGAAACTGTCCGAGCACGTGCAGCAGGCGCACCCCGGCGCCGCGGCCATGGCCGCCGCTGATACAGAATTCTTTTGTGATATTTGCATCAGGTCCTTCAAAAGTCGACAGGCCTACTCGAACCACATGCGCATCCACGCCAAAGTTCCCACCACGAACAGAAAACCGGGCGAGGCCAAAGGCTTCGCCCCGCAGATAATCGGAAAGCCGATCAAGCAGTTCCCCATGATCCAGACGAGCTTCGCCGCGTTCAAGCCCAACATCAATGTTCCCAACGCCCCATACTGCTGCGACATATGCGGAAAGGGCTTCATGCACAAGAAAAATATATGGAAGCATAAGAAAGTTTTGCACGCGGATATCCTCAACGAGAGGAACGACAGCGAGGAGAACACCATGCAGGCCTCCACGGAGGAGGACGAATACAACGTCGACGAAAACGGTATCGCGTTGTCGACGCCACAGTTCAACAGCTTCAACTTTTCCAATTTCGCTAACAACGCCCAACAACATCAACAACAGGCGCAGCAGCCGGCGGCGGCGCCCGCGGACGCGATGCCTTTCTCGTGCGAGCTGTGCTTCAAGCGCTTCCCGCTGCGGACGAGCCTCTGGAAGCACAAGCGCGCCAAACATGGCATCATTAACGCCAGTGTGTCCGGCAACCCCGAAAACCAGGCGCAACCGTCTCAGCCCTCGGAAGGCGGCGGAAGATCCAGTTGCACAATTTGCAAGATAACGTTCTCAGATAAAAAGTCGTACTACCGCCACAGAAAGAACGTGCACAAATCTTCGGCACAAATATGTAAAATCTGCGGGAAACCGGTGAACTCTACGTTGGAGCTGTACGAGCACTTGAAGGCGGCGCACGCTCGTGAATTACTAGGATATAACGCTAACCAGGGCACGAGTAAGGCGCAAGATATATCTCAGGAGCCTGAGGTGGAGTATGAGGCCGAACCCGAAATCGCGGACCCCAGCGCGGAGTATCAGGCTCGATACCCGTGCGACACGTGCGGGAAGCAATTTGTGGGGCTCCTCGCGCTTCAGAACCACCAGTGTATAAACCAAACGGCTTCGGAACCCCAAACATTCGACTGTGAGATCTGTCACAAGAGTTACACGTCGATAGCCGCGCTGAAGAGTCATCGCGGCTGGCATCTCCGCTCGCCCGACGGCAAGGCCGCCGCCAACAACAGCGGCCTGTGGATGCCGCAGCACAAAGTGACCAGCAAGGTCAGCAAGCACGAGGTCGTCGACCCCTCCCAGCTCGCGAGGGTCACCCACTCCACCCCCCTCGCGACCGCCACCACCAAGAGAAGACTGCCGCCTGAGGTCGAAGTGACCGTCGTCAACCCTAACAAGAAATTGAGATCCGACGATTCTATGGAGCTCGAGCCGCAGAACAGCATGCCCGGCACCCTAGAGGACAGATACTGCACCATTTGCGACAAAGAGTTTACGAAACGCGCGGCGTACCAGCGCCACATGGACGAGGTTCACCAGCCCAACTCCGTGTTCTGCCCCGTGTGCGACAAGAGCTTCACGCGCAAGTCGACCCTGCTCGTGCACATGAAGAAGCACTACGGGGGCGAGGGCGAGGGGAGCTCCAGTGCGATAGGCCAGGCGGAGGAGGACGCGTTCGCGTGCGACGTGTGCGGCGGACAGTTCGGCAGCGACGCGGCGCTGCGCGCGCACCGGGCGCGGCACCACGCCGAGGAGGAGGAAGAGTCCGAGGACGACGGCCACGTGCCGCTCGCGCAGCCCGGCGAGTTCACGTGCGGCCAGTGCGGCGACGGCGTGGCCACGCCGCGCGACCTCATCGCGCACCGCTCCATGCACGCCACCCCCACCAAGTTCTTCTGCAACATCTGCAAAGTTTACTTCGCGCGGGCCCTAGACCTGTCCTCGCACACCCGCGCGAGGCACGCCGACAACGAAAAGGTTTACTTCCCCTGTGCCATGTGCGAACGCTTCTATATGAACAAGAAGAGTTTGCAGCGGCACATTGAGATGGCTCACTGA
Protein Sequence: MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPLVLASKIKDCVAVQINENDGLPSNACRKCVDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEEVNIKSEPLSDEAYDDGVVIEGGYNEVASSSKAHLAGPPILASLGLTPRSDKGVESEKDEEDEDEEMMEQAQQQYTKAVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINPPKKPNPIKHLQPKLRLNPFNPKARLMPNPINHKQFQKPMPSRLMPSRVVAPPKPIPIKQPSKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPELLVSEPEIINSGPESPETLISEPEIASFQVETILSEPCYDQNQEEEEADESHNQNQHYDTVDMESDNEIEIARQQENEGEVDETQEEHDGDDNMQQDNEPMEGIEGEMSENENGQQEEDDEHGGSQGDITIDEQNDIQAEAERDNGESNGDKDEEQEDGNDAEDNENENEEDEDLPPGLAPVVEINEDMQTNSYNSEQNEDEEELDESAANETIDEDVKEYDPDKIYVTKTQRDFISKYRDIIQQINTKRCICCDKEHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRANVCTDLWKIIYNEQGITDDLVMEEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQMACVHCGSRFKDRSLWKRHIRNGECTVYIACDLCPEKFVNMQDFNDHALHVHAGSFDPDNQKNCIDGRPTDCPLCGKKHANYPNLVKHLKTAHNEDRPHYCQNCDAKFETSVDLNKHIYAEHSDKVLGAQPIEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQAHPGAAAMAAADTEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEAKGFAPQIIGKPIKQFPMIQTSFAAFKPNINVPNAPYCCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMQASTEEDEYNVDENGIALSTPQFNSFNFSNFANNAQQHQQQAQQPAAAPADAMPFSCELCFKRFPLRTSLWKHKRAKHGIINASVSGNPENQAQPSQPSEGGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQICKICGKPVNSTLELYEHLKAAHARELLGYNANQGTSKAQDISQEPEVEYEAEPEIADPSAEYQARYPCDTCGKQFVGLLALQNHQCINQTASEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPLATATTKRRLPPEVEVTVVNPNKKLRSDDSMELEPQNSMPGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGEGEGSSSAIGQAEEDAFACDVCGGQFGSDAALRAHRARHHAEEEEESEDDGHVPLAQPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVYFPCAMCERFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010410;
90% Identity: iTF_00680834;
80% Identity: -