Camp017387.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419667.1:2664451-2667051[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-09 3.6e-06 27.0 0.0 3 38 12 49 10 55 0.89
Sequence Information
- Coding Sequence
- atgccaaaaacaccaaaagtacaatatagaaaagaaaatttgcagaatgcgatcaaagctgttcaagatgctgacaacaagttgtctacaagacaaattgctgaaaattacggtgttccaaggaccagtcttgggtattacattgaaaatcccgggcataaaactagtctagggccatcaccggtattaactgtttccgaagaaagtcaactagaggaatggataataatctcggccagaaaagggtttcctcgaaataaagaagatattttagatacagtgcaaaagtttctagtggaaaatcctcgtcctaatttatttacaaataatagacccggtgatggttggtggaaggcatttttgaaaagacatccgaggttgacaataagaacatcagaaggagtATCAAAAGCAAGTTCCTATGTCTCGGAAAAAGATATAAGAGGGTGGTTTGCTGAAATCAGCGATTATGCTAAAGAAAAAGACTTGACTCCCattttaaatgatccaaatcgtatttttaatgcagatgaaacaaatttccaaatttgtgttaaaactggccaagtgttagcggaaaaaggtgctaaaaatgtatataatattgaacaatctcaagccaaagaatctataacagttttgttcaccttttctgccgcaggacaagtctgttgtccgttcgttatttatccttatcaaagaatgcctatcaaaaaaattagcgattctgtaccggacggatggggaatcggaaagtctgactcaggatggatgactacggaaactttttatgaatttatagcaaatgtgtttcatccctatctggtcagcaataatgtcaagcttccagttatactctttgtggacggccataaaacgcatttaaatttccatttgagccaactttgcactcaccttcaaattgagttaattgcattgtatccgaatgctacaagaatccttcagcccgccgatgtagctgcttttagacctctaaagatgggatggaaaaaaactgtcagaaaatggcAAAATGAGAATAATAATCAAGGCGTGACTAAATTGAATTTTGCTACTGTGCTTAATGAAACTGTCATAACCAGTTTAAGGCCTGAAATATTAGTGAACGGTTTTAAAGCCTGTGGCCTGTATCCATTTAACCCGGACGCGATTGATTATAATAAATGCCTCGGAGACAAGAACGAGAATGTCACATCGCAAAAAAATAAAATGATACCTGACTCTGCAATGCTAAGTTACGCAAAATTCAAAGAGATCATCGGAACAACTCTTTCCAACGACTTTGAAAACCGTAGTCAGAATTTGCCTTGTCAAAAGAGTAATGAACACTTGAATAAGTTGTTCCAAATATGGCAAGCATATCACGACGTGGAAGTTATGAGTACCACTAAAGAAGGAATAGACTCTTCAGTTGTTACATCGCAAAAAGGCGACAAAGCAGTACAAGTAGTAGATTTTCCTAATGTATCACCGCAAAGAAATGAAGAAGAGTGTGTTGCAGAGATAAATGACTTCAGTGAGCTAGCTTTAAAGACACGAGACTTTAAAGAAATAGAAGGTGCTTTATCTCTTGATATTACTTCCACCGTACCCGAGAAGTCAAAATTTGAGTCTACGCCTTCTGTGGTCACGGTGAAGTCAACTCTTGAGCTGTCAAGTCCACAAAGAAATGAACAAGGATGCGTTGAAGAAGATAGTGAGCTAGTTTTTCAAATACCAGACACATTTAATGAAACAGAAGATGCTTTATCACTAGATTCACTAGACCTTACTTCTCCTATACCCGGAACGTCCAAACCTGTCATGGTACAGTCGTCTGGTCTGTTGCCAAGTCCTAAAATTGTAAAAAGAAAATGTTCTTTAGGAGAATATTTAGCATACCCAGAGACGCCAGTAAGAAAATGGAAAAGGAAAACTGAAAGACAACCATATGCCATTAGCTCCCAAAATTATAAAGCTGCTCTACATTCTAAACAAGTAGAAAAAGAAAATTTGATAAAAGTAAAAGAAGAGAAGAAGTTAGTTAGAAATATGAAAAAAAAAGAAAAAACGAATAAAAAGACTGAAATTACAAATAAAAAAACTGTACAAGAAAATAAAAAACCAATCATAGATAACGCACAATTTATTATGAATGATCCGGGTGAAACTCAATATACTAAAGAAGGAAAAAAAAATCTGAAACGGAAAACAACAAACACGggaaacaatgaccaccaagaagttcaaaattttgagcaacaatctgaacctatactaaaaaagataaaaaaagaaatGGGTGTTAAAAGTAAGGGCAAAAAGAGAACCAATAAGCAATTACCAGAGTCTAAACGGATAACCGTTTTAAGAGAAATAGTTATAAAGCCCGGTAAAAATAGTATTTGTGCAGTTTGTTGTACTAATATGAAAAAGAATACGAGCAGATTGACTTGCAGTTCCTGTTCGGCAAGTTTTCACGTGCGATGCATTCCACGGAAGCATAAGGAACATATACCCGACAGGACTGAATTAAATTTATTCATGTGCCATAATTGTTACATAGTGGAAGATTCTGGCAACAGTGACGATTCTGACTAA
- Protein Sequence
- MPKTPKVQYRKENLQNAIKAVQDADNKLSTRQIAENYGVPRTSLGYYIENPGHKTSLGPSPVLTVSEESQLEEWIIISARKGFPRNKEDILDTVQKFLVENPRPNLFTNNRPGDGWWKAFLKRHPRLTIRTSEGVSKASSYVSEKDIRGWFAEISDYAKEKDLTPILNDPNRIFNADETNFQICVKTGQVLAEKGAKNVYNIEQSQAKESITVLFTFSAAGQVCCPFVIYPYQRMPIKKISDSVPDGWGIGKSDSGWMTTETFYEFIANVFHPYLVSNNVKLPVILFVDGHKTHLNFHLSQLCTHLQIELIALYPNATRILQPADVAAFRPLKMGWKKTVRKWQNENNNQGVTKLNFATVLNETVITSLRPEILVNGFKACGLYPFNPDAIDYNKCLGDKNENVTSQKNKMIPDSAMLSYAKFKEIIGTTLSNDFENRSQNLPCQKSNEHLNKLFQIWQAYHDVEVMSTTKEGIDSSVVTSQKGDKAVQVVDFPNVSPQRNEEECVAEINDFSELALKTRDFKEIEGALSLDITSTVPEKSKFESTPSVVTVKSTLELSSPQRNEQGCVEEDSELVFQIPDTFNETEDALSLDSLDLTSPIPGTSKPVMVQSSGLLPSPKIVKRKCSLGEYLAYPETPVRKWKRKTERQPYAISSQNYKAALHSKQVEKENLIKVKEEKKLVRNMKKKEKTNKKTEITNKKTVQENKKPIIDNAQFIMNDPGETQYTKEGKKNLKRKTTNTGNNDHQEVQNFEQQSEPILKKIKKEMGVKSKGKKRTNKQLPESKRITVLREIVIKPGKNSICAVCCTNMKKNTSRLTCSSCSASFHVRCIPRKHKEHIPDRTELNLFMCHNCYIVEDSGNSDDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00409217;
- 90% Identity
- iTF_00409217;
- 80% Identity
- -