Camp018126.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419654.1:2417372-2419972[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-10 6.9e-07 29.4 0.0 3 38 12 49 10 55 0.89
Sequence Information
- Coding Sequence
- atgccaaaaacaccaaaagtacaatatagaaaagaaaatttgcagaatgcgatcaaagctgttcaagatgctgacaacaagttgtctacaagacaaattgctgaaaattacggtgttccaaggaccagtcttcggtattacattgaaaatcccgggcataaaactagtctagggccatcaccggtattaactgtttccgaagaaagtcaactagaggaatggataataatctcggccagaaaagggtttcctcgaaataaagaagatattttagatacagtgcaaaagtttctagtggaaaatcctcgtcctaatttatttacaaataatagacccggtgatggttggtggaaggcatttttgaaaagacatccgaggttgacaataagaacatcagaaggagtATCAAAAGCAAGTTCCTATGTCTCGGAAAAAGATATAAGAGGGTGGTTTGCTGAAATCAGCGATTATGCTAAAGAAAAAGACTTGACTCCCattttaaatgatccaaatcgtatttttaatgcagatgaaacaaatttccaaatttgtgttaaaactggccaagtgttagcggaaaaaggtgctaaaaatgtatataatattgaacaatctcaagccaaagaatctataacagttttgttcaccttttctgccgcaggacaagtctgttgtccgttcgttatttatccttatcaaagaatgcctatcaaaaaaattagcgattctgtaccggacggatggggaatcggaaagtctgactcaggatggatgactacggaaactttttatgaatttatagcaaatgtgtttcatccctatctggtcagcaataatgtcaagcttccagttatactctttgtggacggccataaaacgcatttaaatttccatttgagccaactttgcactcaccttcaaattgagttaattgcattgtatccgaatgctacaagaatccttcagcccgccgatgtagctgcttttagacctctaaagatgggatggaaaaaaactgtcagaaaatggcAAAATGAGAATAATAATCAAGGCGTGACTAAATTGAATTTTGCTACTGTGCTTAATGAAACTGTCATAACCAGTTTAAGGCCTGAAATATTAGTGAACGGTTTTAAAGCCTGTGGCCTGTATCCATTTAACCCGGACGCGATTGATTATAATAAATGCCTCGGAGACAAGAACGAGAATGTCACATCGCAAAAAAATAAAATGATACCTGACTCTGCAATGCTAAGTTACGCAAAATTCAAAGAGATCATCGGAACAACTCTTTCCAACGACTTTGAAAACCGTAGTCAGAATTTGCCTTGTCAAAAGAGTAATGAACACTTGAATAAGTTGTTCCAAATATGGCAAGCATATCACGACGTGGAAGTTATGAGTACCACTAAAGAAGGAATAGACTCTTCAGTTGTTACATCGCAAAAAGGCGACAAAGCAGTACAAGTAGTAGATTTTCCTAATGTATCACCGCAAAGAAATGAAGAAGAGTGTGTTGCAGAGATAAATGACTTCAGTGAGCTAGCTTTAAAGACACGAGACTTTAAAGAAATAGAAGGTGCTTTATCTCTTGATATTACTTCCACCGTACCCGAGAAGTCAAAATTTGAGTCTACGCCTTCTGTGGTCACGGTGAAGTCAACTCTTGAGCTGTCAAGTCCACAAAGAAATGAACAAGGATGCGTTGAAGAAGATAGTGAGCTAGTTTTTCAAATACCAGACACATTTAATGAAACAGAAGATGCTTTATCACTAGATTCACTAGACCTTACTTCTCCTATACCCGGAACGTCCAAACCTGTCATGGTACAGTCGTCTGGTCTGTTGCCAAGTCCTAAAATTGTAAAAAGAAAATGTTCTTTAGGAGAATATTTAGCATACCCAGAGACGCCAGTAAGAAAATGGAAAAGGAAAACTGAAAGACAACCATATGCCATTAGCTCCCAAAATTATAAAGCTGCTCTACATTCTAAACAAGTAGAAAAAGAAAATTTGATAAAAGTAAAAGAAGAGAAGAAGTTAGTTAGAAATATGAAAAAAAAAGAAAAAACGAATAAAAAGACTGAAATTACAAATAAAAAAACTGTACAAGAAAATAAAAAACCAATCATAGATAACGCACAATTTATTATGAATGATCCGGGTGAAACTCAATATACTAAAGAAGGAAAAAAAAATCTGAAACGGAAAACAACAAACACGggaaacaatgaccaccaagaagttcaaaattttgagcaacaatctgaacctatactaaaaaagataaaaaaagaaatGGGTGTTAAAAGTAAGGGCAAAAAGAGAACCAATAAGCAATTACCAGAGTCTAAACGGATAACCGTTTTAAGAGAAATAGTTATAAAGCCCGGTAAAAATAGTATTTGTGCAGTTTGTTGTACTAATATGAAAAAGAATACGAGCAGATTGACTTGCAGTTCCTGTTCGGCAAGTTTTCACGTGCGATGCATTCCACGGAAGCATAAGGAACATATACCCGACAGGACTGAATTAAATTTATTCATGTGCCATAATTGTTACATAGTGGAAGATTCTGGCAACAGTGACGATTCTGACTAA
- Protein Sequence
- MPKTPKVQYRKENLQNAIKAVQDADNKLSTRQIAENYGVPRTSLRYYIENPGHKTSLGPSPVLTVSEESQLEEWIIISARKGFPRNKEDILDTVQKFLVENPRPNLFTNNRPGDGWWKAFLKRHPRLTIRTSEGVSKASSYVSEKDIRGWFAEISDYAKEKDLTPILNDPNRIFNADETNFQICVKTGQVLAEKGAKNVYNIEQSQAKESITVLFTFSAAGQVCCPFVIYPYQRMPIKKISDSVPDGWGIGKSDSGWMTTETFYEFIANVFHPYLVSNNVKLPVILFVDGHKTHLNFHLSQLCTHLQIELIALYPNATRILQPADVAAFRPLKMGWKKTVRKWQNENNNQGVTKLNFATVLNETVITSLRPEILVNGFKACGLYPFNPDAIDYNKCLGDKNENVTSQKNKMIPDSAMLSYAKFKEIIGTTLSNDFENRSQNLPCQKSNEHLNKLFQIWQAYHDVEVMSTTKEGIDSSVVTSQKGDKAVQVVDFPNVSPQRNEEECVAEINDFSELALKTRDFKEIEGALSLDITSTVPEKSKFESTPSVVTVKSTLELSSPQRNEQGCVEEDSELVFQIPDTFNETEDALSLDSLDLTSPIPGTSKPVMVQSSGLLPSPKIVKRKCSLGEYLAYPETPVRKWKRKTERQPYAISSQNYKAALHSKQVEKENLIKVKEEKKLVRNMKKKEKTNKKTEITNKKTVQENKKPIIDNAQFIMNDPGETQYTKEGKKNLKRKTTNTGNNDHQEVQNFEQQSEPILKKIKKEMGVKSKGKKRTNKQLPESKRITVLREIVIKPGKNSICAVCCTNMKKNTSRLTCSSCSASFHVRCIPRKHKEHIPDRTELNLFMCHNCYIVEDSGNSDDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00409218; iTF_00409219; iTF_00409220; iTF_00409222; iTF_00660245; iTF_00410230; iTF_00660246; iTF_00660249;
- 90% Identity
- iTF_00409218; iTF_00409219; iTF_00409220; iTF_00409222; iTF_00660245; iTF_00410230; iTF_00660246; iTF_00660247; iTF_00660249;
- 80% Identity
- -