Camp002689.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419665.1:14064773-14079947[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.2e-11 3e-08 33.7 0.0 4 39 172 208 169 212 0.89 2 4 9.9e-13 9.2e-10 38.5 0.1 1 39 223 261 223 264 0.94 3 4 1.2e-14 1.1e-11 44.7 0.0 2 45 279 323 278 323 0.96 4 4 2e-18 1.9e-15 56.8 0.0 1 43 330 373 330 375 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCGCGGTTATCCGCAGGTCAAGCACGAACCGACCTCCGAAGACGACGACTCGCAGTACGCACACGGCTATCTCACAAATCAGATACTACCTTCATTGGAACTCCATCCGGTGAAGGTCGAGGCCGATATAGACGACAATGCGTCTGCGCATATATTACGGCATTTACAGGGTCCGGCAAGTATGGAGGAGCTAGCGCCGCCGGCGCCGGCGGGCCCCGCCGCCACGCCGGTCGCCGTCAAGCTGGAACCTGCTGAGCCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCACTCGGACACGCTGGGTTCCATGCTCATCGATAGACACAAGACGCTGCTCGGCGCGAACGATGCCGACTCCATGGATTTCATGCCTCTCCTTACTGTTAAAGACGAGCCTCTCTCTGAAGGAGAGCAACACCACCTGAGTGGGTCAGACACGAGTGACTCCAGCACCCAGCCGGAGCCGCCTCGCGGCAGCCCTAAAAACTGGACGCAGCAAGACATGGAACTGGCCCTGGAAGCCCTGCGGACGCACAACATGAGTCTTACTAAGGCATCGGCCACATACGGCATCCCGTCAACAACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCTCCAAGTCCTGGAGCGAGGAGGATCTTCGCGGCGCCCTGCACGCGCTGCGGTCCGGGGCTATTTCTGCCAACAAAGCCAGCAAGGCTTACGGCATCCCAAGCAGCACTCTCTACAAGATCGCCCGGCGCGAGGGTATTCGGCTGGCGGCTCCGTTCAACGCGGCGCCCACCGCGTGGCGACGGGCTGACTTGGAGCGGGCGCTGGCGTCCATCCGCTGCGGAGCGGCGTCTGTACAGCGAGCGGCTTCGCAGTTTGGCATACCTACAGGCACACTGTACGGGCGATGCAAACGAGAGGGAATCGAGCTGTCACGGTCTAACCCTACGCCCTGGTCAGAAGACGCAATGGGGGAGGCCTTGGAAGCTGTCAGAGTGGGACAAATGTCAATAAACCAAGCAGCGATCCACTATAATCTGCCTTATTCGTCACTCTACGGACGGTTCAAGAGGTGCAAATATCAAAGTCCTCAAGCAATGCCTCAGCAGAACATGCCGGAGATGGAGATGGAACCTCCACAAGCCCAGATGTACTATCCGCACCAAGTGCCCATGCCCGAGGACTATCATCAGAGCTACATGGCGGAACCTGAAGCTATGCATGCCGCCGTCATTCAGGAGCCCTATGGGATGTACTATCAAGGTTGCAGCAGCAGTATCGCGACGAGTTGA
- Protein Sequence
- MPGRGYPQVKHEPTSEDDDSQYAHGYLTNQILPSLELHPVKVEADIDDNASAHILRHLQGPASMEELAPPAPAGPAATPVAVKLEPAEPAVTLETLAPAPHSDTLGSMLIDRHKTLLGANDADSMDFMPLLTVKDEPLSEGEQHHLSGSDTSDSSTQPEPPRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEEDLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQAMPQQNMPEMEMEPPQAQMYYPHQVPMPEDYHQSYMAEPEAMHAAVIQEPYGMYYQGCSSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- iTF_00659381;
- 80% Identity
- -