Camp023129.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- E2f4
- Assembly
- GCA_948474715.1
- Location
- OX419660.1:15083331-15086750[-]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.8e-29 4.9e-25 87.5 0.3 2 65 10 74 9 74 0.98
Sequence Information
- Coding Sequence
- ATGACCGACTTAATATACAAACGTTATGAAAAATCTTTAGGTCTTCTTACGACACGATTCGTTTCATTATTACAAAAAGCCAAGGATGGGGTTTTGGACTTGAAAATCGCTACCGATTTATTGGCTGTAAGACAAAAGCGACGGATATATGATATAACGAACGTATTAGAAGGTATTGGATTGATAGAAAAACGAAGTAAAAACAGCATACAATGGAAGGGAGCAGGTCCAGATGGAAATGCTTCGGACATTGGAGAGAAAGTTATGCAGCTGCGGAGACAGATTGGACGGCTAGAGGAACATGAAGAATTGCTTGACAAACAAATCCATTGGATAGAGCAGAGTATTAAAAATGTATTAGAAGATATTGATAATGAGCCCCTTGTTTACGTGAGAAAGAATGACATCGAGCAGTGCTATGAAGAGAGCCAGGTGCTCGTTTTGGAGGCCCCCATAGGGGCCAGCTTGGCTGTGGCATCTGTACCCAAGGGCAGAGAACAGCAATTCATTCTACACGTCAAATCTGATGATCCAGTTGGCGTAATCTTGTTATGTGACTCGGATAAAGAAAAGGAAATTGAAGACGTAGCCATGCAGGACAGTGAGGTTCAAGACATTACAGACAACTTTGTTCATTCCATTGATAGTGATGATTATTTACTGCGATTGAGTCCTCCGGTGACCAAGCAAGACTTTTCGTTCTCCTTGCGGGATTCCGAAGGTTTATGTGATCTCTTTGATATTCCTTGTTAA
- Protein Sequence
- MTDLIYKRYEKSLGLLTTRFVSLLQKAKDGVLDLKIATDLLAVRQKRRIYDITNVLEGIGLIEKRSKNSIQWKGAGPDGNASDIGEKVMQLRRQIGRLEEHEELLDKQIHWIEQSIKNVLEDIDNEPLVYVRKNDIEQCYEESQVLVLEAPIGASLAVASVPKGREQQFILHVKSDDPVGVILLCDSDKEKEIEDVAMQDSEVQDITDNFVHSIDSDDYLLRLSPPVTKQDFSFSLRDSEGLCDLFDIPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411212; iTF_00149170; iTF_00871091; iTF_00410073; iTF_00680313; iTF_00412315; iTF_00772669; iTF_00009798; iTF_01463050; iTF_01463954; iTF_00008694; iTF_01133516; iTF_01072241; iTF_00660101; iTF_00656937; iTF_00289419; iTF_00654028; iTF_01134577; iTF_00021133; iTF_00462165; iTF_00342007; iTF_01135546; iTF_00155105; iTF_00156047; iTF_00325164; iTF_01245728;
- 90% Identity
- iTF_01133516;
- 80% Identity
- -