Camp015053.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- -
- Assembly
- GCA_948474715.1
- Location
- OX419669.1:9968081-9973081[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.9e-08 0.00032 21.7 0.0 2 53 126 181 125 188 0.89 2 4 1.5e-06 0.013 16.6 0.0 6 53 209 260 205 265 0.80 3 4 3.2e-06 0.027 15.5 0.0 15 53 300 339 284 345 0.80 4 4 0.3 2.5e+03 -0.4 0.0 27 42 364 380 346 385 0.66
Sequence Information
- Coding Sequence
- ATGGTGCTGGTGTGCACGCTGGAGTGCGTGTACGCGCTGACGTCGCTCGGCGACCGCGCCGGCGAGTGCGTGGCGCGCGTGCCCGGCCTCGTCGCCACGCTCGTGTCGCTCGTCACCGTCGAGGCACAAAGCTACGGGCCGCGGGCCTGCATCCTGATGCGGGTGGTGGAGACGGTGAGCGGGCCGAGCGCCGCGGCGGCCGAGCGCGAGCAGGAGCGGCACAACCCGCCCACGCAGCTACAGGCGGTGCCCATGCCATCGACGCCGACGAAGGCAGTTGAAGTTCCTGCGCAATCGCAGTCTCCGCAGCCCGCAGCGCCGCCCAACAGCATACAGCACTCGCACATGCAACAGCGCACAGTTCAGGAAAACGAGCACTTCGCCCAAGCGTGGCTCCGCAATACATACGAGACTCTTCCAGTAGGCGACAACAGCACTTGTGACGCCCCGGAACTGTACCGACAGTACCTCGCCTGCTGCGCCAAACTCAACAGGAAGGGGCTCATTGCGCCCGCCAATCTGTCCCGACTTGTCAGAACTGTACCGACAGTACCTCGCCTGCTGGGCCAAGCTCAACAGGAAGGGGCTCATTGCGCCCGCCAATCTGTCCCGACTTGTCAGGTAATCTGGTTACGTAACACAAACGAGACTCTTCCAGTAGGCGAAAACAGCACTTGTGACGCCCCAGAACTGTACCGACAGTACCTCGCCTGCTGCGCCAAACTCAACAGGAAGGGGCTCATTGCGCCCGCCAACCTGTCCCGACTTGTCAGAACTGTACCGACAGTACCTCGCCTGCTGCGCCAAGCTCAACAGGAAGGGGCTCATTGCGCCCGCCAACCTGTCCCGACTTGTCAGGTAATCTGGTTACGTAACACAGACGAGACTCTTCCAGTAGGCGACAACAGCACTTGTGACGCCCCAGAACTGTACCGACAGTACCTCGCCTGCTGCGCCAAGCTCAACAGGAAGGGGCTCATTGCGCCCGCCAACCTGTCCCGACTTGTCAGAACTGTACCGACAGTACCTCGCCTGCTGCGCCAAGCTCAACAGGAAGGGGCTCATTGCGCCCGCCAACCTGTCCCGACTTGTCAGTACCTCGCCTGCTGCGCCAAGCTCAAGAGGAAGGGGCTCATTGCGCCCGCCAACCTGTCGTGA
- Protein Sequence
- MVLVCTLECVYALTSLGDRAGECVARVPGLVATLVSLVTVEAQSYGPRACILMRVVETVSGPSAAAAEREQERHNPPTQLQAVPMPSTPTKAVEVPAQSQSPQPAAPPNSIQHSHMQQRTVQENEHFAQAWLRNTYETLPVGDNSTCDAPELYRQYLACCAKLNRKGLIAPANLSRLVRTVPTVPRLLGQAQQEGAHCARQSVPTCQVIWLRNTNETLPVGENSTCDAPELYRQYLACCAKLNRKGLIAPANLSRLVRTVPTVPRLLRQAQQEGAHCARQPVPTCQVIWLRNTDETLPVGDNSTCDAPELYRQYLACCAKLNRKGLIAPANLSRLVRTVPTVPRLLRQAQQEGAHCARQPVPTCQYLACCAKLKRKGLIAPANLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -