Camp023715.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- Rfx2
- Assembly
- GCA_948474715.1
- Location
- OX419662.1:7981680-7999114[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 8e-37 6.7e-33 113.6 0.1 3 77 185 259 183 261 0.97 2 5 3.1e-21 2.6e-17 63.7 0.3 38 78 264 304 259 305 0.93 3 5 1.3e-18 1.1e-14 55.3 0.4 39 73 360 394 347 395 0.89 4 5 2.1e-19 1.8e-15 57.8 1.1 41 78 395 432 394 433 0.95 5 5 5.1e-22 4.3e-18 66.2 0.2 38 78 487 527 475 528 0.89
Sequence Information
- Coding Sequence
- ATGTGGAATGTTCCAGGCTTTGAGTGCTGTGGCGACGAGGTGCTAGTGGAGTCGTCGCCGCCCGCCTCGCCTGTCATGGCGGCGCGGCTCGCTCAGCCTGCGCAGGGAGCGGGCGCGGGCGGCGGCGCGTCGCCGAGCGCCGTGCGAGAGCTCATCGTCATACCGGAGATCTCTAACACCATCAGCTTACAGCAGGCCATACAACAGGTGTCAAGCACGGTGGTGGAGGTGAACGGCGACAGCTCCGGTCACTCGAGCCCTACGACCGAGGCCCGGCACACATACATCACTGTAGCCAGCGAGGGCAGTAATGGGGTCAACTATCATGTGCAATACGTGGAGCCTCAAGAGATCTACACCCAGGGCCATGAGACTCATATGGAAACCCTTCGCTCCTACCCCGTGTATGGCGTCGCAACGGTCAACGCGGCCGAGCAGCCGACCGAGTCGTGGAGCGCCGATGAGTTCTCATACAGCGTGGTCGCGGGCACGGACGAGGCCACGTCACCCGCGCCCGCTCCCACTACACCGCCGCAGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACAACTATGAGACTGCCGATGGCGTGTCTCTGCCCCGATCGACTCTCTACGCGCACTACCTCCGACACTGCTCGGCCCATCGACTGGACCCAGTGAACGCGGCTTCGTTCGGCAAGCTGATCCGGTCCGTGTTCGTCGGCCTGCGGACGAGGAGGCTCGGCACGCGAGGCAACTCCAAGTATCACTACTACGGTATCAGATCGGTTGTCCAACTACTGGACCCAGTGAACGCGGCTTCGTTCGGCAAGCTGATCCGGTCCGTGTTCGTCGGTCTGCGGACGAGGAGGCTCGGCACGCGCGGCAACTCCAAGTATCACTACTACGGTATCAGTGAACGCGACTTCGTTCGGCAAGCTGATCCGGTCCGTGTTCGTCGGTCTGCGGACGAGGAGGCTCGACACGCGCGGCAACTCCAAGTATCACTACTACGGTATCAGGTGATTACCTACAACTGCAATAGTGTACCTTATCTCGTTACAATAAGATCGGTTGTCCAACTACTGGACTCAGTGAACGCGGCTTCGTTCGGCAAGCTGATCCGGTCCGTGTTCGTCGGTCTGCGGACGAGGAGGCTCGGCACGCGCGGCAACTCCAAGTATCACTACTACGTGAACGCGACTTCGTTCGGCAAGCTGATCCGGTCCGTGTTCGTCGGTCTGCGGACGAGGAGGCTCGGCACGCGCGGCAACTCCAAGTATCACTACTACGGTATCAGTGAACGCGACTTCGTTCGGCAAGCTGATCCGGTCCGTGTTCGTCGGTCTGCGGACGAGGAGGCTCGGCACGCGCGGCAACTCCAAGTATCACTACTACGGTATCAGGTGATTACCTACAACTGCAATAGTGTACCTTATCTCGTTACAATAAGATCGGTTGTCCAACTACTGGACCCAGTGAACGCGGCTTCGTTCGGCAAGCTGATCCGGTCCGTGTTCGTCGGTCTGCGGACGAGGAGGCTCGGCACGCGCGGCAACTCCAAGTATCACTACTACGGTATCAGGGCGAAAGCCAGCGTTCCCGATTCGCCGCCGCCCGATCCTAATGATGAGAAGGCCGATATTCAAGATATGCAGGAGGCGCGGTCGCGCTCGGCCGAGCCGGCGGCGGCGGGCGGCGTGCCGGGGCTGGCGCACCGGCAGTACCTCGGCGCCGTGGTGGCGGGCTCGCCGCCGCAGCTGCCCGCCGCCGCCGCCGACGACCTGCCGCCCGACTCCCTCACCGCGCTACAGGACCACCACCGGTAA
- Protein Sequence
- MWNVPGFECCGDEVLVESSPPASPVMAARLAQPAQGAGAGGGASPSAVRELIVIPEISNTISLQQAIQQVSSTVVEVNGDSSGHSSPTTEARHTYITVASEGSNGVNYHVQYVEPQEIYTQGHETHMETLRSYPVYGVATVNAAEQPTESWSADEFSYSVVAGTDEATSPAPAPTTPPQPRMPPATVQWLLDNYETADGVSLPRSTLYAHYLRHCSAHRLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRSVVQLLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGISERDFVRQADPVRVRRSADEEARHARQLQVSLLRYQVITYNCNSVPYLVTIRSVVQLLDSVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYVNATSFGKLIRSVFVGLRTRRLGTRGNSKYHYYGISERDFVRQADPVRVRRSADEEARHARQLQVSLLRYQVITYNCNSVPYLVTIRSVVQLLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKASVPDSPPPDPNDEKADIQDMQEARSRSAEPAAAGGVPGLAHRQYLGAVVAGSPPQLPAAAADDLPPDSLTALQDHHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -