Cper021685.1
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- -
- Assembly
- GCA_951394215.1
- Location
- OX596226.1:3748996-3750735[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-09 1.6e-06 28.2 0.0 5 38 1 35 1 41 0.85
Sequence Information
- Coding Sequence
- ATGACAAAAGCTGTTGAAGCTGTACGAGCGAATGAAATGGGTTATAAAAAGGcagcaaaattatttaaagttccAAGAGCTACTTTGAAAGATTAcgttaaaaattctgaaaaatctGTGGAAACTTTGGTGTCTGGAAGAATGGGAAGAAAACCAGTTTTGCCGACAGAATTGGAAGAGGAGCTGGTAAAGTATTGCTTGCAAATGGAGAAAAATTATTATGGTGTTACCGCTTCTGATTTAAAACGAATGGCGTACCAATTGGCGATCAGAAACAATATTCCACATCCATTCTCACTAGCCAAGAAGAAGGCGGGCAAAAAATGGATGACATTGTTTATGGCTCGCCACCCTGAGTTATCATTCCGTCAACCAGAGTCCTTATCACGAGCTCGTGTTCAAGGTTTTACTGCGGAAAATGTTAAAACTTTCTTTAACTTATTGAAACCTGAGATGCAAAAGATTAACTTCAACcctaataaagtttttaatgttgatgaaacagggATTAGCACTGTTCAACATAAAGTGAGAAAAATTCTAACAGTGAAAGGCAAAAAAGAAGTTCACAAATTGTCATCTGCTGAAAGAGGTGCATTAGTAACTGTTGTTACTTGTATGTCGGCTACTGGACAGTTTATACCTCCGTTGATGGTGTTtccaagaaaaaatatgaaagctgAACTACTTGATGGAGCTCCTCCAGGCACTATTGCTGGATGCCATCCATCTGGTTGGATCCAGCCTGAACTGTTTGCAAAATGGCTGAGACATTTTGTGTCTATCGTAAAACCATCAAAAGAAGATCCTATTCTACTGGTGTTAGATGGGCATTACAGCCATACAAGGAATTTGGATGTGATAGACATCGCACGTGACAATGGAGTATCAATAATCTGCCTCCCCCCGCATTCTACTGATCATATGCAGCCATTAGATGTCTCATTTATGTTTCCTTTGAAGACATACTATGCCCAAGAAATAGAAAATTGGTTGAATAATCACCCAAGGCGAGTTGTTACGCACTACCAAATTGGAGAAATATTTGGAAAAGCTTATTCAAAAGCTTGTAAAATTGATACAGCAATCAACGGATTTCGAAAAACGGGAATTTTCCCACTTAACGAAAACATTTTTGACGACACTCCACATGCTCCTTCTTCGACCAATACAACACCGTTGGCAAATGCTGTCCCGTCACCTTCATATTCTATAATGGAAAGACCAACAACTCCATTATCACAACCGGTTATAACTCCTTCATCTCCATTTATAGTTCCAGCAGATTTGCATCCTGTTCCCGTTATTGAAGCACCTACACCTTCAACAAGAAGAGGTAAAGCGATGATAGTCACCGCCTCACCAcacaaaatagaaataatagaaGCTGTAAGGAAGCAGACAGAGAAGAATGAAAGATTGGGAAAAAAGAAaagcaaaaatgtaaaaaaaacaaaaccagcTGGaggcaacaaaaataaaaacaaaaccaaaaagcGACGCAAAGAACTGTCCTCTGAAGAAGAATCAACTAATGATAATGAGCCAGATTTGGTGTCTACTGACGAAGAAGATAGCGAGAATGATGACGCTGAATGCCCAGtttgtaataatacctattCTCAAAACAAAAATGGAGAAAAATGGATAAGATGCATACAATGTTTCCAATGGATGCACGAAGATTGCGTTGAAAATCCAggaccaaaatttgtctgctctATTTGTTTGGAGAATTAG
- Protein Sequence
- MTKAVEAVRANEMGYKKAAKLFKVPRATLKDYVKNSEKSVETLVSGRMGRKPVLPTELEEELVKYCLQMEKNYYGVTASDLKRMAYQLAIRNNIPHPFSLAKKKAGKKWMTLFMARHPELSFRQPESLSRARVQGFTAENVKTFFNLLKPEMQKINFNPNKVFNVDETGISTVQHKVRKILTVKGKKEVHKLSSAERGALVTVVTCMSATGQFIPPLMVFPRKNMKAELLDGAPPGTIAGCHPSGWIQPELFAKWLRHFVSIVKPSKEDPILLVLDGHYSHTRNLDVIDIARDNGVSIICLPPHSTDHMQPLDVSFMFPLKTYYAQEIENWLNNHPRRVVTHYQIGEIFGKAYSKACKIDTAINGFRKTGIFPLNENIFDDTPHAPSSTNTTPLANAVPSPSYSIMERPTTPLSQPVITPSSPFIVPADLHPVPVIEAPTPSTRRGKAMIVTASPHKIEIIEAVRKQTEKNERLGKKKSKNVKKTKPAGGNKNKNKTKKRRKELSSEEESTNDNEPDLVSTDEEDSENDDAECPVCNNTYSQNKNGEKWIRCIQCFQWMHEDCVENPGPKFVCSICLEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01564523;
- 90% Identity
- iTF_00752011; iTF_00408370;
- 80% Identity
- -