Cper006107.2
Basic Information
- Insect
- Cydalima perspectalis
- Gene Symbol
- Rfx1
- Assembly
- GCA_951394215.1
- Location
- OX596205.1:2259178-2273920[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4.8e-37 4.2e-33 114.3 0.0 3 78 226 301 224 302 0.97 2 8 2.5 2.2e+04 -3.3 0.0 24 33 631 640 619 647 0.70 3 8 3 2.6e+04 -4.2 0.1 25 35 671 681 669 686 0.76 4 8 3 2.6e+04 -4.2 0.1 25 35 710 720 708 725 0.76 5 8 3 2.6e+04 -4.2 0.1 25 35 749 759 747 764 0.76 6 8 3 2.6e+04 -4.2 0.1 25 35 788 798 786 803 0.76 7 8 3 2.6e+04 -4.2 0.1 25 35 827 837 825 842 0.76 8 8 3 2.6e+04 -4.2 0.1 25 35 866 876 864 881 0.76
Sequence Information
- Coding Sequence
- atgtctgaGATGGGGTTTGAGAACGTGTTTTACCTGGAGAATTTTGAGTGCGGCGACGAAGTGTTAGTGGAATCGTCGCCGCCCGCCTCGCCCGACATGGCGACGCGGCTTGCGGCCCCTGCCCAGGGAGCTACCGGCGGAACTGGCGGAGGCGCGTCCCCCAGCACCGTGCGCGAGCTCATCGTGATCCCCGAGATACCCAACTCAATACATCTACAACACGCCATACAGCAGGTGTCGAGCACGGTGGTGGAGGTGAACGGCGACAGCTCGGGACACTCCAGCCCCACCACGGAGGCGCAGCACACCTACATCACCGTCGCTATGACGGGGGCATGGAGGGAAGGCGGCCCGGTGTCCGTCAAGACCGAGGATCACAGTGACCAAGAAAGCGAGGGTGGTAACGGCGTCAACTACCATGTGCAGTACGTGGAGCCGCAGGAGATATACGCGCAGGGACACCAGCCGCAAATGGAGACCCTCCGCTCGTACCCGGTGTACGGCGTGGCGACGGTGGGCAGCGCgggcgccgacgccgcgcccgccgacgGCGCCTGGCCGGCCGGCGCCTCCGCCGAGTACACGGCCTACGGGGTAGTGGTCGCGGGCGACGAGGCAGAGGCGCCGGCGTCGCCCGCCacgccggccgccgcgccgctgcCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTGGACCACTACGAGACCGCAGAGGGCGTGTCGCTGCCGCGCTCGACGCTGTACGCGCACTACCTGCGCCACTGCGCCGCGCACCGGCTGGACCCCGTCAACGCGGCGTCGTTCGGCAAGCTCATCCGCTCCGTGTTCATCggcctgcgcacgcgccgcctcGGCACGCGCGGCAACTCCAAGTACCACTACTACGGCATCCGTGCCAAGGCCAGCGCTGGCGACTCGCCGCCTGCGCCCGACGCCGCCGACGACAAGACCGACGTCGCCGACCATCAGGAGAACCGTGAGCCGGAGCGCGAGCGCGAGGCGGCGTCCAGCCCGGCCGGGCTCGCGGGCCTGGCGCACCGCCAGTACCtgggcgcggccggcgcgcccgACCCGCCGCCGCTCGAGCTGCGCGACCTGCCGCgcgacgcgccgcccgccgcgctgcacgcgctGCGCGACCAGCACAGGTCCCACGGCGTGGAGTTCCTGGAGGCGGTGGCGGCGCTGGACACGGGCGCGGTggagcgcgcgcggcgcgcgttCTGGCGGCgggcgcccgccgccgcgcgccgcctggcCGCGCGCCGCGACGTGGCCGCTTGGCTGCGCGCCGCCGACCTGCGCCTCTACCAGCAGGCCGTCGAGCTGCTGCTGCCCGACGTGCTGCGCCCCATCCCGCCGCAGCTCACGCAGGCCATCCGCAACTTCGCGAAGAGCCTGGAGTCGGCgctggcggcgggcgcggcgggcgcgccggcggcggcggcgcgcgcgcaggcggcggcggcggcggcgctgtCGGCCGCGCTGCGCCGCTACACGTCGCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCACCAACCACCACCAGATACAGCAGATGCTGTCGGACCTGAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCCGCCTGGGCCTGTTCCTGCGGCAGCGCCGCCACCGCGCACCGCCTTGAGGCAGACTTTAAGGCGACGCTGGGGCGCGGCGCGACGCTGGAGCAGTGGGCGGGCTGGCTGGAGGCGTGCGTGCGCGACGCGCTGGCGGCGCACGAGCGGCGCGCCGACTacacggcgcgcgcgcgccgcctgctGCTCGACTGGTCCTTCTACTCGTCGCTCGTCATCCGCGAGCTCACGCTGCGGTCGGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTAATCGAGCGGCGCGTGGCGCAGCACGCGCGCAGCCCGCCCATCGCCGTCATGCACCGCGCCACGGTGAGCGCCGCACCCATACATACTGTGCTGTACGACGAGTACGTGTCGTACCTGATCGAGCGGCGCGTGGCGCAGCACGCGCGCAGCCCGCCCATCGCCGTCATGCACCGCGCCACGGTGAGCGCCGCACCCATACATACTGTGCTGTACGACGAGTACGTGTCGTACCTGATCGAGCGGCGCGTGGCGCAGCACGCGCGCAGCCCGCCCATCGCCGTCATGCACCGCGCCACGGTGAGCGCCGCACCCATACATACTGTGCTGTACGACGAGTACGTGTCGTACCTGATCGAGCGGCGCGTGGCGCAGCACGCGCGCAGCCCGCCCATCGCCGTCATGCACCGCGCCACGGTGAGCGCCGCACCCATACATACTGTGCTGTACGACGAGTACGTGTCGTACCTGATCGAGCGGCGCGTGGCGCAGCACGCGCGCAGCCCGCCCATCGCCGTCATGCACCGCGCCACGGTGAGCGCCGCACCCATACATACTGTGCTGTACGACGAGTACGTGTCGTACCTGATCGAGCGGCGCGTGGCGCAGCACGCGCGCAGCCCGCCCATCGCCGTCATGCACCGCGCCACGGTGAGCGCCGCACCCATACATACTGTGCTGTACGACGAGTACGTGTCGTACCTGATCGAGCGGCGCGTGGCGCAGCACGCGCGCAGCCCGCCCATCGCCGTCATGCACCGCGCCACGGACGACGACGAGGATATCCCGGAGGAGCCGGCGCGCGAGGAGCCCGACGAGGACGAGCCGGAGCCGGAGCCGGAGCAGGAGCAGGAGCAGGAGTGGGACTGGGaggacgacgacgacgacgacgacgagcCCGACGCCAAGAAGCTCAAGATGCCCATCGAGCAGTAG
- Protein Sequence
- MSEMGFENVFYLENFECGDEVLVESSPPASPDMATRLAAPAQGATGGTGGGASPSTVRELIVIPEIPNSIHLQHAIQQVSSTVVEVNGDSSGHSSPTTEAQHTYITVAMTGAWREGGPVSVKTEDHSDQESEGGNGVNYHVQYVEPQEIYAQGHQPQMETLRSYPVYGVATVGSAGADAAPADGAWPAGASAEYTAYGVVVAGDEAEAPASPATPAAAPLPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCAAHRLDPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKASAGDSPPAPDAADDKTDVADHQENREPEREREAASSPAGLAGLAHRQYLGAAGAPDPPPLELRDLPRDAPPAALHALRDQHRSHGVEFLEAVAALDTGAVERARRAFWRRAPAAARRLAARRDVAAWLRAADLRLYQQAVELLLPDVLRPIPPQLTQAIRNFAKSLESALAAGAAGAPAAAARAQAAAAAALSAALRRYTSLNHLAQAARAVLTNHHQIQQMLSDLNRVDFRVVREQAAWACSCGSAATAHRLEADFKATLGRGATLEQWAGWLEACVRDALAAHERRADYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAQHARSPPIAVMHRATVSAAPIHTVLYDEYVSYLIERRVAQHARSPPIAVMHRATVSAAPIHTVLYDEYVSYLIERRVAQHARSPPIAVMHRATVSAAPIHTVLYDEYVSYLIERRVAQHARSPPIAVMHRATVSAAPIHTVLYDEYVSYLIERRVAQHARSPPIAVMHRATVSAAPIHTVLYDEYVSYLIERRVAQHARSPPIAVMHRATVSAAPIHTVLYDEYVSYLIERRVAQHARSPPIAVMHRATDDDEDIPEEPAREEPDEDEPEPEPEQEQEQEWDWEDDDDDDDEPDAKKLKMPIEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -