Cpun019374.1
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- -
- Assembly
- GCA_951394245.1
- Location
- OX596193.1:2515514-2517781[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.37 8.7e+03 -2.7 0.1 27 48 10 31 9 33 0.73 2 9 0.041 9.7e+02 0.4 0.1 21 48 66 93 51 96 0.82 3 9 7.5e-05 1.8 9.1 0.1 26 48 102 124 95 129 0.88 4 9 8.7e-06 0.21 12.1 0.0 25 48 131 154 127 158 0.91 5 9 3.7e-06 0.088 13.3 0.5 21 49 158 187 154 191 0.79 6 9 0.021 4.9e+02 1.3 0.1 24 50 191 217 187 219 0.85 7 9 0.0021 49 4.5 0.0 20 48 235 263 227 266 0.90 8 9 0.0078 1.9e+02 2.7 0.0 22 48 283 309 278 320 0.85 9 9 0.0063 1.5e+02 3.0 0.0 26 48 443 465 436 467 0.83
Sequence Information
- Coding Sequence
- ATGTATATGAACCATCTAGATTTTTACTGCGACTACTGTGACCGATCCTTCACCAGAAagtacaatttacaaaatcaTATAGAAAAGTTTCATAACAGCGTAGTCAATGGCACTTGGAAGTGTCATATTTGTCAACAAAAGTTTGCGAGCCAGCCCGGCTTGCAAGTGCATCTGTCGAAAGGACACAATTCACACAATGAAGTTTTACCCGAATGCGATATTTGTGGTAGAGTATTTGCacgcaaacaaaacattatatcGCATATGATCACTATGCATTTGCAAGGGTCGTCACACGAATTGAAATGCAAAGTGTGTGATAAGTCATTCGCTACAGATAGAAATCTCCGGAGACATGTTAATGTGATGCATAATCCTGATACAGAGAATTTAACTTGTAATATTTGCCATATGGTGTTTAAAAGCAAGGCTAATTTAAAGTCGCATTTGCAGATAGGTCATAACAGTGATAATGAGCCAATTAATAAATGCGCTATTTGCAACGATAGAGTCTTTTCTGAGACTAGAAATCTGAGGAGACATATGGAAAATTGTCATGGGgacaaacaatattacaaGTGTGACTTATGTCCTAAAGTGTACCCATCCAATCAGAGTTTGAAACGTCACACGCGAAATACTCACTACACACGAGATGTCAAAATAGAGAAGACAGACTCCACTATCTCCAATAATTCTTATGAATCAGAAGACGAATATACATGCACCACGTGCAATGATATATTCTTCGAAGAATCTGACTTAAGACATCATATAAAAACAGAGCATTCTTTCGAAACTTTCTATAGATATTGCAAGAGTTATCTagaaaaaactaattttaaagatcAGATAACGAACTGTGAGTTCTGTTATATGGCTTTCGTTAATGTTTCGGAGTTGAAGCAGCATATGAAAACTGTACATTGCATTGAGTATAGCTTTGCGAAATGCAATGTGTGTTTTGGGAACTTTTTCAGCGATGCAGCTATTGTTGAGCACAAAAAGATATGTCTGCCCCCGCCTAACGTACACTCTTGTAGTCATTGTGATAAACTATTCACTGATGTCTTAAGTCTTGACTTCCACACAAGAATTTTCCATCCACAAGCTCAAGTAGCAGATTCTAACATATCCTCAAGCAATCTTGATGACCAAGAAGGTAATGCGTTGGAGAATCATTTGGCAACGCAGCACTTGGCAGAAAATGAGGTTTATAAATGTAAACCGTGTGATCTGATACTCACTGGCATTAGCAATTTTGAGACACACAATATTGAAAACCATTCGAATGATTTAGCCAAAATTGACCCTGCTAAAATACCTTCTTGTGTGATATGTATGAAGTTATTTAGCTCAAGAAAAACTCTGAAACGGCACATCAAGAAATTCCACTTAGAATTTCTGCCCGAAGAACTTCTGAACTGCGCTAAGGAATTTCTAACCATTGACTGCGAGAGTTGCATCAGAAAACTGAACTCCACCACCTATATCAACATTTACAACGTAACGAAAAGCAGAAACGCAATCATTTTCAAATGCAAAGCATGTAAAAATACAGTTGATGCTTTGGAATTCGCTGTGCAAAAGCAGAGATTGAGATTTGGCACTAATAAAACCAAGATGGTGTTGAGCGAACTTTGTACCACTGAAATGAGTGATACAGAACCTGGGTATTCGGGGTCTAACGTGAACCATGAACCAGTGAGCACAACAAATGACAATATCAAGATTGAACTGCAGGAACTACTGGATGAAACACAGATTAAAGATGAGCCGATGTCGCCGTAG
- Protein Sequence
- MYMNHLDFYCDYCDRSFTRKYNLQNHIEKFHNSVVNGTWKCHICQQKFASQPGLQVHLSKGHNSHNEVLPECDICGRVFARKQNIISHMITMHLQGSSHELKCKVCDKSFATDRNLRRHVNVMHNPDTENLTCNICHMVFKSKANLKSHLQIGHNSDNEPINKCAICNDRVFSETRNLRRHMENCHGDKQYYKCDLCPKVYPSNQSLKRHTRNTHYTRDVKIEKTDSTISNNSYESEDEYTCTTCNDIFFEESDLRHHIKTEHSFETFYRYCKSYLEKTNFKDQITNCEFCYMAFVNVSELKQHMKTVHCIEYSFAKCNVCFGNFFSDAAIVEHKKICLPPPNVHSCSHCDKLFTDVLSLDFHTRIFHPQAQVADSNISSSNLDDQEGNALENHLATQHLAENEVYKCKPCDLILTGISNFETHNIENHSNDLAKIDPAKIPSCVICMKLFSSRKTLKRHIKKFHLEFLPEELLNCAKEFLTIDCESCIRKLNSTTYINIYNVTKSRNAIIFKCKACKNTVDALEFAVQKQRLRFGTNKTKMVLSELCTTEMSDTEPGYSGSNVNHEPVSTTNDNIKIELQELLDETQIKDEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00407798;
- 90% Identity
- iTF_00407798;
- 80% Identity
- iTF_00407798;