Cpun001559.1
Basic Information
- Insect
- Cyclophora punctaria
- Gene Symbol
- L
- Assembly
- GCA_951394245.1
- Location
- OX596168.1:6504705-6517329[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.6e-06 0.00012 22.7 2.1 1 23 86 108 86 108 0.99 2 16 0.6 45 5.2 5.8 1 23 114 136 114 136 0.97 3 16 5.4e-06 0.0004 21.1 5.1 1 23 142 164 142 164 0.99 4 16 1.7e-05 0.0013 19.5 0.1 1 23 170 192 170 192 0.98 5 16 1.1 82 4.4 0.1 10 23 215 229 214 229 0.93 6 16 2.7 2e+02 3.1 0.2 3 23 251 273 249 273 0.79 7 16 0.29 21 6.2 0.0 3 23 338 358 337 358 0.97 8 16 0.18 13 6.8 0.1 2 23 372 393 371 393 0.91 9 16 0.00028 0.021 15.7 1.0 1 23 401 424 401 424 0.94 10 16 0.0011 0.083 13.8 0.3 1 23 429 452 429 452 0.94 11 16 0.2 15 6.7 0.3 1 23 503 527 503 528 0.93 12 16 0.00096 0.071 14.0 0.0 2 23 580 601 579 601 0.96 13 16 0.055 4.1 8.4 0.0 1 23 608 630 608 630 0.97 14 16 0.087 6.4 7.8 0.2 1 23 733 755 733 755 0.96 15 16 0.0054 0.4 11.6 0.1 1 20 763 782 763 785 0.95 16 16 8.2 6.1e+02 1.6 0.1 6 23 796 813 796 813 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTCAAGGGTAATAGTAGTCGGCTAGAGCATCTCATTGAGAAGATACAGGCCAACAAAGAAAATCACGACGTTATTACGGAAGACATAAAAGAGGCCCTGGGTAGCGTGGGCAGCGCGGCGGGCAGCTCCTGGCCTTCGTCGACGCCGGAGCCGTCCCCGTCGCCGGGCTCCACGCCCTCGGGCGACGCCGCCGACGGCGACCCCGAGCCGCCCTTCACACTCGGAGTCACCGAGCACACGCCGTACCAGTGCCAATTCTGCGAGAAGGCCTTCCCCAGGCAGTCCTATCTCAAAAAACATGAACAGactCATTCGGACCAGATGCCGTTTCGTTGCGAATTTTGCTCGAGGCTATTCAAACACAAACGTTCCAGAGATCGTCACGTGAAGCTTCACACCGGAGACCGCAAGTACCGCTGCAGCCACTGCGAGTCGGCATTCTCCAGGAGCGATCACCTGAAGATCCACATGAAAACCCATGACAATCAGAAGCCGTTCCAATGCACGGTGTGCAACCGTGGCTACAACACGGCGGCGGCGCTGACTGCTCACATGCAAGGACATAAGCGGGAGAGGGAGGGCCGCGAGCCGGACCGGCGGCGGAACATGCGCTGTCTGCGACGAGGGGATTTCAGGAGACCGGATCTGTTGCAAGCGCATCTAACCAGTGTCCATGAAATTGATGCCTTAACGCAACCCCGCCGCGTCGCGTCCCAGCCTCCCCCTACTCTTCTCGCCTGCATGTATTGCACTCGCGATACCTTTACAAGTATGGAGCAACTTCAGTTGCACGTGCGAGCGGCTCACTCCACGCTTCTCAACGGTGAAGCATCCCTACAGAGCGTCGACCAGCCGGCGCCCACCGATCTCAGCCGAAGGGAATCCGATCCCAGCCGAAGAGAATCCGACATCAGCCGATCGGATGAAGAACCTCTTGCGAAGCGTTCTCGCTTCGGAGCCGGGACTCCTCAATCCACTCTATCACCGAACACTTTGCTATGCAACCAATGTGACGCGGCCTTACCTGACTTCGAAGCTTTTAGGGCACATCTGAAAGGACATTTAGAAGAAGGCGGAGAGTTGAGCCGCACGAGTCCAGTTCCGTGCGTACATTGTGGGGCGACGTTCGCTGATGCACAAGCCTCAGAGAGGCATCTGACAGCGCATTATCTAGCGGTCTCATGCGAGTACACCTGCCACAGTTGTGCCCGAAGCTTTCCTACCCGCGAAGATTTACAGAGCCATCTGTTAGACCTGCACGCGCAACATCTCTATCGGTGTTCGTTCTGCAAGGAGATCTTTGAATCCAAGGCTGCCCTTCagGTCCACTTCGAGGTGTCGCACAGCGGCGAGAGCAAGGTGTGGGTGTGTCGCgggtgcggcgcggcgggcggcgcgctgcgCTCGGAGGCGGAGGGCGCGGCGCAcgtgcgcgcgcgccacgCCGCCGCGCGCTGCGCCTGCGGCGCGCTGctggcgccgcgccgccgcgccttCCGCTGCCCCGCGCCCGCCTGCCCCGACGCCTTCGCCGTGCACTACCTGCTCGAGAGGCACCTGCAGCTGCACCACGGCATCAACCAGACAATAAACGGCGACATACCGATCCCGAAACGCGTGGAAAACAACAACGGCCCCGAGGCGGAGGGCGCGGGCTCGCCCGGCGCCCCCGGcgacgccgcgccgcccgacgaGCGGCGCCGTAAGAACGGCGCGGTGGCGCTGCAGTGCGCCTACTGcggcgagcgcgcgcgcagccgcGCCGAGCTGGAGGCGCACACGCGCGCGCACTcgggcgccgccgcgcgccacaAGTGCCTCATCTGCGACGAGGTGCTGCCCTCCGCCGCGGTGCTCGCCGAGCATAAGCTCACGCATTGTAAAGTGGTGGCGGGCGACTCGTGCGCGCGGTGCCGCGCGCGGCTGGTGTCGGAGGAGTCGTTCCTGCTGCACCTGGCGCGGCACCACCCCGCGCTGCCGGCGCCGTGCGTGGTGTGTCGCCAGACGCTGGCCTCCGAGCCCGAGGCGCGCCTGCACGCGCGCTTCCACCTGCGGCCCGCTGACACAGACCGCCGATGTGCGATATGTCTCCGTGCGCTCCCAGAAGGCGAGGCAGGCGAGGGCGCGCGCGCATGTTCCACATGTTACGCTCGCCACGCGACGCCGCGCGTAACGTCCACCGAGCACGAGTGTCGACTGTGTAGACGCGCGCTCGGCTCGCCTTCCCGGTTACAGGCACATCTCATCGAGCACACGTTCGCAGGCATCGGCGCGTTCACTTGCTACCTGTGCTCTGCCGTGTTCACGAGCGCGGTCGGTCTTCAGAGGCACCTGCCCGAGCATTCAGCCGCGCCTCGCCCCTACGACTGCCCCTGCGGCATGAAGTTCTTCTTCCGAGCCGAACTTGACAATCATGCCTTCGTTCACTTAGAACATAGTACGCAGAGAGCGTTCTATGAGGCGTATGCGCGAGGTGCGGCTAACGCTTGGGCCGCGCTCGCGCCGCCCGAAGTCCCTCCGGTCATTCGTCCGCCCACGCCGGTCCCAGAGGTCAAGCAAGAGCCGGAGGTCAAAGAGGAGCGGCCGGATGAGTACATCGAGGTGggctcgccgccgcccgcgccccccgcgccgcccgcgccccccgCGCCCCCCGCGCCCTCCCCGCGCATCAAACAGGAGCAACCGGACGCGTCCTGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVITEDIKEALGSVGSAAGSSWPSSTPEPSPSPGSTPSGDAADGDPEPPFTLGVTEHTPYQCQFCEKAFPRQSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCSHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTAHMQGHKREREGREPDRRRNMRCLRRGDFRRPDLLQAHLTSVHEIDALTQPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHSTLLNGEASLQSVDQPAPTDLSRRESDPSRRESDISRSDEEPLAKRSRFGAGTPQSTLSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGELSRTSPVPCVHCGATFADAQASERHLTAHYLAVSCEYTCHSCARSFPTREDLQSHLLDLHAQHLYRCSFCKEIFESKAALQVHFEVSHSGESKVWVCRGCGAAGGALRSEAEGAAHVRARHAAARCACGALLAPRRRAFRCPAPACPDAFAVHYLLERHLQLHHGINQTINGDIPIPKRVENNNGPEAEGAGSPGAPGDAAPPDERRRKNGAVALQCAYCGERARSRAELEAHTRAHSGAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDSCARCRARLVSEESFLLHLARHHPALPAPCVVCRQTLASEPEARLHARFHLRPADTDRRCAICLRALPEGEAGEGARACSTCYARHATPRVTSTEHECRLCRRALGSPSRLQAHLIEHTFAGIGAFTCYLCSAVFTSAVGLQRHLPEHSAAPRPYDCPCGMKFFFRAELDNHAFVHLEHSTQRAFYEAYARGAANAWAALAPPEVPPVIRPPTPVPEVKQEPEVKEERPDEYIEVGSPPPAPPAPPAPPAPPAPSPRIKQEQPDAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444152;
- 90% Identity
- iTF_00407007;
- 80% Identity
- -