Ctho020555.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- Rfx2
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010023990.1:1437-18345[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-37 2.5e-33 114.9 0.0 3 78 182 257 180 258 0.97 2 2 1.1 1.2e+04 -2.7 0.0 24 32 590 598 574 605 0.68
Sequence Information
- Coding Sequence
- ATGTCTGAGTTGGGCTTCGAGCATGTGTTTTATCTGGAGAACTTCGAGTGTGAGGGGTCTGAGGTGCTGGTGGAGTCTACGCCCCCCGCGTCCCCCGCGCCCTCCGCTCCCCGCGAGATGGCGGCGCGACTCGCGGCGCCCGCACAGGGCGCAGGCGGAGGCGCGTCGCCGAGTGCTGTGCGAGAGCTGATAGTTATACCAGAACTACCTAACACCATACATCTGCAGCATGCCATACATCAGGTGTCAAATGTGGAGGTGAACGGTGATAGCTCGGGTCACTCGAGCCCCAGCACAGAGGCCCAGCATACATACATTGTAGCGAGCGAGGGCGGCACCGGAGTGAACTACCATGTCCAGTATGTGGAGTCCCAGGAAATATACACCCAGCCCGGCCCGCAGCCACAGATGGAGACCCTGCGCACGTACCCGGTGTACAGCGTGGAGGGAGGGGAGGCGGGCGCGGGCGAGTGGTGCGAGCTGTACGCGGCGCCGGAGCGGCCCGCCTCGCCTGCGTCGCCCGCGCCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAAACCGCTGAGGGCGTGTCCCTCCCGCGATCAACGCTATACGCCCACTACCTGCGCCACTGCGGCGCGCACCGCCTCGAGCCCGTCAACGCGGCGTCCTTCGGCAAGCTCATACGCTCGGTGTTCGTCGGGCTGCGCACGCGCCGGCTCGGCACACGTGGCAACTCTAAGTACCACTACTACGGCATAAGAGCGAAACCCGCCGCCGACCTACCGTACAAGCCCGACGCGCCCGCAGAAGACCCACCCACTGTGGATGACAAGGAGGTTCGCGGCGGATCTGTGGACACCGCGGCAGCGGCTGCGGCGAGCGCGCACGGCGAGTACCTCGGCGCCGTGGTGCCGCCCGACCCGCCGGAGCTACACGTCACCGACCTGCCCGACGATCTGCCGCCCGACTGCCTGCAGATGCTGAGGGATCAGCACCGATCGCACGGGGCGGAGTTCCTGGCGGCGGTGGCGGCTTTAGACACGGCTGGCGTGGAGCGGGCGCGGCGCGGGTTTTGGCGGCGCGGGCGACGCGTGCTGTGGCGGCTGGCATCGCGGCGCGACGTATGCGCTTGGCTGCGGCGCGCTGACCTGCGCCTCTACCAGCGAGCTGTTGATCTGCTCTTGCCCGACGTGTTGAGACCGATACCGCCCGCGCTCACGCAGTCTATCCGCAACTTCGCGAAGGGTTTGGAGGCGGCGCTTGCGGCGGGCGGGGCGGGTGCGCCCGCTCGTGCTGCGCGTGCAGCGGCAGCGGCGGCGGGCGCGCTGGCGGCCGCGCTCCGCCGGTATACGTCCCTCAACCATCTCGCACAGGCGGCTCGTGCAGTCCTCAACAACCAGCACCAGATACAGCAGATGTTGGCAGACCTCAACCGCGTGGACTTCCGTGTCGTCCGGGAGCAGGCGACGTGGGCGTGCGCCGCCGGCAGCGCCGCCGCCGCGCACCGACTTGAGGCTGACTTCAAGTCATCGTTTGCCGCGACACTCGGTCGCGGGTTGGGCTTAGAGGCGTGGGCGGCGTGGCTCGAGGGTTGTGTGCGCGCAGCACTCGCGCCGCACGAGCCCGCCCCGCCCGCGCGCTCAGAGCGATATGTGCCGCGCGCGAGGCGACTGCTACTCGACTGGTCCTTCTACTCCTCGCTTGTCATACGCGAGCTGACTCTAAGGTCGGCGGCGTCGTTTGGGTCGTTCCACTTGATCCGCCTGCTGTACGACGAGTACGTGTCGTTCTTGATCGAGCGTCGCGTCGCCGCCCACGACCGCCGCGCGCCAATCGCCGTCATGCGCcgtgacgagGACGAGGAGGAGGGCGAGGGGGAGTGCGGTTCGGGCGGTGACGGCGAGGGGGTGGAGGGAGGCGACGTGGGCGATGGGGGAGACGGGGAGGGGGGTGACGAGGGCGAAGACGACTGGGACTGGGGAGACGAGGACGACGAGCCGGACGCGAAACGAGCGCGTTTGGATGACTAG
- Protein Sequence
- MSELGFEHVFYLENFECEGSEVLVESTPPASPAPSAPREMAARLAAPAQGAGGGASPSAVRELIVIPELPNTIHLQHAIHQVSNVEVNGDSSGHSSPSTEAQHTYIVASEGGTGVNYHVQYVESQEIYTQPGPQPQMETLRTYPVYSVEGGEAGAGEWCELYAAPERPASPASPAPPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCGAHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPAADLPYKPDAPAEDPPTVDDKEVRGGSVDTAAAAAASAHGEYLGAVVPPDPPELHVTDLPDDLPPDCLQMLRDQHRSHGAEFLAAVAALDTAGVERARRGFWRRGRRVLWRLASRRDVCAWLRRADLRLYQRAVDLLLPDVLRPIPPALTQSIRNFAKGLEAALAAGGAGAPARAARAAAAAAGALAAALRRYTSLNHLAQAARAVLNNQHQIQQMLADLNRVDFRVVREQATWACAAGSAAAAHRLEADFKSSFAATLGRGLGLEAWAAWLEGCVRAALAPHEPAPPARSERYVPRARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSFLIERRVAAHDRRAPIAVMRRDEDEEEGEGECGSGGDGEGVEGGDVGDGGDGEGGDEGEDDWDWGDEDDEPDAKRARLDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00288598; iTF_01217207; iTF_00933321; iTF_00934473; iTF_00403436; iTF_00164032; iTF_01178137;
- 90% Identity
- iTF_00403436; iTF_00164032; iTF_00934473; iTF_00933321; iTF_01217207;
- 80% Identity
- -