Cmes000830.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000020.1:34628-35272[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-09 4.9e-07 31.3 0.0 5 35 15 46 11 49 0.90
Sequence Information
- Coding Sequence
- ATGGAAGAGACaaaaaagaaaggaaaatgGGATCAGCAAAGTTTAAAAACTGCGATGGACAAGATTTTGTCCAAAGAAATGAGTCTCAGAGAAGCTTCGTCACGTTACAATATTCCAAAAAGCACTCTACATGATAAAATAACAGCATTGAATAGTGGAGAAGAAATCACGTTGCAACCAAAGATTGGTAGATTTACAAAAACCTTCTCACCCGAGTATGAACAAGTTTTACTGGACCACATAAAAGATTTGTCTTATAGATGTCTGCCGCTAATGAAAAAAGACTTTTTGAAGTTAGCTTACGACTTAGCTGAAGCTATGAAGATCAACCATCGTTTTAATACAGAGAAAAAAACTGCTGGTAAgcatttttattatgatttcaTGCATAGACATCCGGAAATTTCATTGAGGACACCTGAGTCGACAAGCATGATGCGAGCCGTAGGGTTTAATAAACCCCAAGTggatatattctacgacaatctggAAAGGCTAATGACACAGTATAAATTTCCACCCTCCAACATTTACAACTGTGATGAAACTGGAGTCAGCTGCGTGCATAAACATCAAAAAGTTCTGGCTCCGAAGGCTGTCCGTCAAGTAGGAAAGCTCACTTCTGCTGAGAGGGCAAAAATATAA
- Protein Sequence
- MEETKKKGKWDQQSLKTAMDKILSKEMSLREASSRYNIPKSTLHDKITALNSGEEITLQPKIGRFTKTFSPEYEQVLLDHIKDLSYRCLPLMKKDFLKLAYDLAEAMKINHRFNTEKKTAGKHFYYDFMHRHPEISLRTPESTSMMRAVGFNKPQVDIFYDNLERLMTQYKFPPSNIYNCDETGVSCVHKHQKVLAPKAVRQVGKLTSAERAKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01440952;
- 90% Identity
- iTF_00404704; iTF_00404838; iTF_00404835; iTF_00404841; iTF_00404812; iTF_01440952;
- 80% Identity
- -