Cmes001499.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000041.1:285747-286460[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-09 5.8e-07 31.1 0.0 5 35 15 46 11 49 0.90
Sequence Information
- Coding Sequence
- ATGGAAGAGACaaaaaagaaaggaaaatgGGATCAGCAAAGTTTAAAAACTGCGATGGACAAGATTTTGTCCAAAGAAATGAGTCTCAGAGAAGCTTCGTCACGTTACAATATTCCAAAAAGCACTCTACATGATAAAATAACAGCATTGAATAGTGGAGAAGAAATCTCGTTGCAACCAAAGATTGGTAGATTTACAAAAACCTTCTCACCCGAGTATGAACAAGTTTTACTGGACCACATAAAAGATTTGTCTTATAGATGTCTGCCGCTAATGAAAAAAGACTTTTTGAAGTTAGCTTACGACTTAGCTGAAGCTATGAAGATCAACCATCGTTttaatacagaaaaaaaaactgctggtaagcatttttattatgatttcaTGCATAGACATCCGGACATTTCATTGAGGACACCAGAGTCGACAAGCATGATGCGAGCCGTAGGGTTTAATAAACCCCAAGTggatatattctacgacaatctggAAAGGCTAATGACACAGTATAAATATCCACCCTCCAACATTTACAACTGTGATGAAACTGGAGTCAGCTGCGTGCATAAACATCAAAAAGTTCTGGCTCCGAAGGCTGTCCGTCAAGTAGGAAAGCTCACTTCTGCTGAGAGGGGCAAAAATATAACAGTTTTGTTTTGTATGAGTGCTAACGGTCACTTCATACCACCTTTTTTTGTCTTTCCAAGGCAATGA
- Protein Sequence
- MEETKKKGKWDQQSLKTAMDKILSKEMSLREASSRYNIPKSTLHDKITALNSGEEISLQPKIGRFTKTFSPEYEQVLLDHIKDLSYRCLPLMKKDFLKLAYDLAEAMKINHRFNTEKKTAGKHFYYDFMHRHPDISLRTPESTSMMRAVGFNKPQVDIFYDNLERLMTQYKYPPSNIYNCDETGVSCVHKHQKVLAPKAVRQVGKLTSAERGKNITVLFCMSANGHFIPPFFVFPRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01440952;
- 90% Identity
- iTF_00404719;
- 80% Identity
- -