Cmes009478.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cybosia mesomella
Gene Symbol
-
Assembly
GCA_946251875.1
Location
CAMIUH010000273.1:558822-561302[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3e-09 8.7e-07 30.5 0.0 2 38 16 52 15 59 0.87

Sequence Information

Coding Sequence
ATGGTTagtaattataaaagaaaatctaacAAAGCGTCGTATTCTAGAGAAACGCTACAAGAAGCAGTAAAAGCTGTAAAAAATGGGAATTTAAGTGGCTATAAAGCTGCTCAAATATATAAGATACCACGGATGACGATCATGGATCATGTTAACAATAAGagaattaaatcaaaatcacTAGGAAGAAACACAGCATTGTCGGTAGAAGTAGAAAAGAAATTAGCATTCTACCTTCACATAATGGAAAAGAATGGCTTTGGATTAAGCAAAACGGAAGTCTTAGAAATGGTTTCACAATATGTTCAGCAAAGCAAATTATCAACGCCATTTACAAATGGTATACCCGGTAATGCATGGTTCACTGCATTCAAAACAAGAAACAATTTGTCTATTAAAAAACCCCAAGCAGTTGAATTCGCGAGAAAGAAGGCTGTGAATCCTTTTATTGTTCATTCGTATTTTGATTTACTAAATAACACATTAACTGATTTAAATTTGTGGGATAAACCTGGTCAAATTTGGAACCTTGATGAGACAAGTTTCTCAAAAGATCCACAGAAAACTAAAATCGTTGGGCTTAAAGGACACGCGGCTACTAGGGTAATAGCCTCACCAGGAAAAGATAACACGACGGTTTTACTTGGAGCCAATGCGGCTGGAGAAAAATTGGCTCCACTGGTAATTTTTAAAGGGAAAAATATGTGGGATGAGTGGACGTCCCCAAAAGCTTATCCGGGAACAACCTATGCTGCCACGaagaatggatggatggagacCGCCATTTTCGAAAGGTTtttcaaaaaaacatttttgccaGCAGTAGGAGATACACGCCCTGTTATTCTCATTTATGATGGCCATGCAACTCATGTAggtttaaatataattgaagaagCGCGTAAAAACAACATTACAATATTAAAGTTGCCAGCACACACCAGTCATGTTTTACAGCCCCTTGATATTGCCGTAATGAAATCGTTCAAAGATCGATGGGATCCGTTACTAGTAAAATGGCAACGTTTGAATGTTGGTATCACATTACCAAAGAAAGAGTTTGCTAGGCTTATCGGAGTGGTTTGGTCGGAAATTGATAGCCAAGTGTTAAGAAATGGTTTCCGCAAGGCCGGAATTTTTCCTTTCAACCCTAATGCGATTGAAGAAAAACATTTCGACACGTTGAAGCTACAACAATGGAAAAATCTTCAAGACCTTGGTTTACAAAATGTGCAAAGCCCTCATGTAGGATGTTCTAATTGTGATGCCAAAACGGAGATTAGAGCTACTAAAAATAACCCAAAAACTCTGCTCACATTAGCACTTAATTGCATTACGGAAATAGTTACATCTTCATCTTGTGTATCACACATGCCCGCGAACTCAAATAAATCGATCCAAGTGTTAGAAGACAGAATTGTGACTTTTGAAGAACTCCTATTGATGAAGGTTAAAGCTGGAAACAATGTAAAAACTAAACGTCAAAGAGTAGCACCAGGAGCCGAAGTTATAACGCATCAAGATGTTGTTCTCAGAAAAATGGacgaaaaattaaaacatattaaaaaagaaccaaCAAAGCCCCGAAAAAGTAACCAATCAGCGCTGCATAAGAAAACCgccaatttaaatgtaaaaggaACACTTGACTCTACCCGTGACAGCGATGCCATTGTTACTTCAAGGTGTTCCGAAAATAGCAACAAGTCTAAGACATCACATGCTGATCTTTCATTACCTGGTCCATCTGGTTTAACGAAGAATTCTTTTGTTAGAGAACACCAAACGCGAAAAATAATAACTGtaacaaaaaaaggtaaaggCATTGGGAAAAGTAGTATCAAGATCAAAGAAGGAAGTCAGAAAACAGTAATGAAAACGCGAACACGACGTCAAAAGCGAGCTTATGTATCCTCATCGACCTCGACAAGTGTTTCGGATTGTATGAGTATTCATAGCGACTCAGATATTATCGACTTTGACCAAGATCTGAATGAAAGTTTTTCAGAAACTCCAGAAGAGAAAACAATGACCCAAAAAGAGAAAAACAGATCACATACAGTAAATGAAAAGACAGAGGGAGTTGGTTACCGAATAATTAGAAAAAGTGAAGAAAACAAGTTTGATTCAGATAGTAGCTATGAGGATAGATGCGATTTAAAGAACGTCACTGTGGAGAAAAcccaaataaagaattatagCATTAATGATGAAGTGTTAGTGCGATATTATGAGCGAAATAAATGGACATACTACGCTGGCTATGTAGAAGAGGTAAAACCTGGAGATGATGACGTGTATTACAAGATAAGATATTACAAAACTGTTAAAAAACCATTGAAGtttattgtaacaaaaaaaatagatcGTGATGTTGTGCCCAGcataaacatattaaaaaaaatacgcttGCATGCTGATCCAAGCTATCCCAAAGAATTTAAATTGTCTAATGATGAagacaacatttattttatgtaa
Protein Sequence
MVSNYKRKSNKASYSRETLQEAVKAVKNGNLSGYKAAQIYKIPRMTIMDHVNNKRIKSKSLGRNTALSVEVEKKLAFYLHIMEKNGFGLSKTEVLEMVSQYVQQSKLSTPFTNGIPGNAWFTAFKTRNNLSIKKPQAVEFARKKAVNPFIVHSYFDLLNNTLTDLNLWDKPGQIWNLDETSFSKDPQKTKIVGLKGHAATRVIASPGKDNTTVLLGANAAGEKLAPLVIFKGKNMWDEWTSPKAYPGTTYAATKNGWMETAIFERFFKKTFLPAVGDTRPVILIYDGHATHVGLNIIEEARKNNITILKLPAHTSHVLQPLDIAVMKSFKDRWDPLLVKWQRLNVGITLPKKEFARLIGVVWSEIDSQVLRNGFRKAGIFPFNPNAIEEKHFDTLKLQQWKNLQDLGLQNVQSPHVGCSNCDAKTEIRATKNNPKTLLTLALNCITEIVTSSSCVSHMPANSNKSIQVLEDRIVTFEELLLMKVKAGNNVKTKRQRVAPGAEVITHQDVVLRKMDEKLKHIKKEPTKPRKSNQSALHKKTANLNVKGTLDSTRDSDAIVTSRCSENSNKSKTSHADLSLPGPSGLTKNSFVREHQTRKIITVTKKGKGIGKSSIKIKEGSQKTVMKTRTRRQKRAYVSSSTSTSVSDCMSIHSDSDIIDFDQDLNESFSETPEEKTMTQKEKNRSHTVNEKTEGVGYRIIRKSEENKFDSDSSYEDRCDLKNVTVEKTQIKNYSINDEVLVRYYERNKWTYYAGYVEEVKPGDDDVYYKIRYYKTVKKPLKFIVTKKIDRDVVPSINILKKIRLHADPSYPKEFKLSNDEDNIYFM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00404706;
90% Identity
iTF_01152052;
80% Identity
iTF_00404706;