Csei014522.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994548.1:2308274-2316847[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.76 9.4e+03 -2.7 0.0 25 40 156 171 151 184 0.59 2 6 0.00096 12 6.6 0.2 26 51 185 210 174 213 0.88 3 6 0.016 2e+02 2.6 0.0 22 40 221 239 215 244 0.76 4 6 8.4e-06 0.1 13.2 0.1 23 45 248 270 242 276 0.90 5 6 0.19 2.3e+03 -0.8 0.0 22 45 275 298 271 301 0.82 6 6 0.0039 48 4.6 0.0 14 45 323 354 318 359 0.84
Sequence Information
- Coding Sequence
- ATGCAGTGTCGGGCATGCTTAAAAACAAACTGTAAAGTAACTCGACTCGACGAACTTAAGATTCGAAGCTTCAACCTAATTACTGATTTATGTATACATATGGAGGACAATCTGCCACAACAACTGTGTGATATCTGTGCAAGAGATCTTGAGTTCTGTATAGAATTCAGAGAGAAATGTATAACTTCAAATTCCATATTAGCGAGTGCTCTAACTTCGATTGACGGTTCAAAAATTATCTCCAAAATTAAGCAAGAAGATAATTTAGAATATGATGAGATAAAATATTCTGAAATTAATAAACAAGAAGATACTACAAAACTAAAGAGTGAATACAATGATTTGGAGAACAATGAGACACTACAATCTGAAGACAATTTTATTTACGAGTATATACCAGGGCTCTGTGCAGAGATGATAGAAAAGGACAAGCTATGTGACCACGTCAAAAGTCACGAGAGCAACAATCACTGTGGCATATGCTCCTCCCAGCTCAAAGACTGGGAGACGATGCTGTATCACAGAATATCTCATCTGCAAAAACCCAACATTATGTGTCACATTTGTTTGAAAATTTTCCAAAATTCAGTCTCCTTAGAATATCATTACAATATAAAACATTTGGATAAAGTTAAACTACATCAACTACGGATGCATACTGCAGAAAAGGCGTCATGTAAGCTGTGTAAGGCTGTGTTCAAAAACGAGAGCCGCCTCGAACTACACAAATGCAAATTCAGTGATCCAACTATATGTCCCGTGTGTGGCATTATCATCGAAGTGCCGAAAAAGATGAAGCGCCATCTAGAATCGCACAGTGACGAGCGTAAATACAAGTGTGACCGCTGCGACGCAACATACAAGACCCACGGCGCGCTGCGGGTACACTTGAACAAGCACGACGGTATCCGCGCACACAAGTGCGATTACTGCTCGAAAACCTTCTGGTCTCAAACTACACTCAAAAAACATCGTAGGGTGCATACTGGTGAGAAGCCATATGTGTGCAAGGTGTGTAACAAAGGTTTTTCTGCCAACCACAACCTCAAAGTTCACATGCGAGTGCATGGAGTATTTAACCTTATAAAGAAAAAAGGTGCTGAAGATGATTCTACGAAAAATGTTCAAGAATGCAACAAAAATAGTCCTATTTAA
- Protein Sequence
- MQCRACLKTNCKVTRLDELKIRSFNLITDLCIHMEDNLPQQLCDICARDLEFCIEFREKCITSNSILASALTSIDGSKIISKIKQEDNLEYDEIKYSEINKQEDTTKLKSEYNDLENNETLQSEDNFIYEYIPGLCAEMIEKDKLCDHVKSHESNNHCGICSSQLKDWETMLYHRISHLQKPNIMCHICLKIFQNSVSLEYHYNIKHLDKVKLHQLRMHTAEKASCKLCKAVFKNESRLELHKCKFSDPTICPVCGIIIEVPKKMKRHLESHSDERKYKCDRCDATYKTHGALRVHLNKHDGIRAHKCDYCSKTFWSQTTLKKHRRVHTGEKPYVCKVCNKGFSANHNLKVHMRVHGVFNLIKKKGAEDDSTKNVQECNKNSPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00404267;
- 90% Identity
- iTF_00404267;
- 80% Identity
- iTF_00404267;