Csei002030.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994569.1:1467516-1470141[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.015 1.9e+02 2.7 0.1 18 48 123 153 117 159 0.81 2 11 0.0091 1.1e+02 3.4 0.1 22 44 155 177 150 181 0.87 3 11 0.00022 2.7 8.6 0.1 21 52 182 213 176 214 0.89 4 11 0.0079 98 3.6 0.2 22 46 211 235 208 241 0.91 5 11 0.0092 1.1e+02 3.4 0.1 22 46 267 291 258 293 0.83 6 11 0.0067 83 3.9 0.5 22 45 295 318 290 325 0.87 7 11 0.0015 19 5.9 0.1 22 47 323 348 318 353 0.86 8 11 0.017 2.1e+02 2.6 0.1 22 51 351 380 348 381 0.84 9 11 0.0015 18 6.0 0.2 20 47 377 404 368 409 0.89 10 11 0.077 9.5e+02 0.5 0.0 22 47 407 432 403 437 0.79 11 11 0.0001 1.3 9.7 0.0 21 45 434 458 426 461 0.90
Sequence Information
- Coding Sequence
- ATGATAACGGATACAACATATTATGAGACACCCGCGCCAGATGTACAGATTCAATTTTGTGATGAGAGAGGTGCAAACCCAGATGCCAAAAATGTTACAATAGGAAGCCTATCCACAATATCACGGGATCCTCTTCTTGACACAGCGGTAACAGATACCACTCACGATGTACAATCAAAGATTCTGCTGGAAGTTAAAGTTGAGAATAACCTGAATGATGATGAATATTCTCTTCCAACGTCGTCACAATTCATAGGCAGCCAGGAGAATATAGTACAGGGAACAGTGAGCGCAGAAACAATACAACATATAAAAAGGGAGATTGTCATTAAAAGTCGTGAACAAGTCAAGGGGCGAGGTCACGTCAGAAAAAAAAGGGAGAAACTGCACAGATGTGACGAATGTTATAGGATCTTTAGATTCAAGAGTCAATTATTTGATCACCTCAGGACACATAGAGGGGATAAACCATTTTCTTGCGACATTTGTTCCAAAGCTTTCAAACGTATCAGCGATCTGCAGAGACACTCAAGAGTGCACACTGGAGAAAGACCCTTTAGCTGTGAAGTATGCTTCAAATGCTTCAAATTCAAAACCGATTTGTATCGCCATATCAAGATACACAGTGTAGAGAAACCTTTAAGATGTGAAGTTTGTCCAAAGAAGTTAAAAAATAAAGAGTGTCTGAATAGACACATGAAATTGCATTTAGGCAACCAGAAATACAGCTGCCACGTTTGTTCAAAGAGGTTTTTGTACGAAAGTGATGTACATCGTCACATGAAAACTCACAGCCAGGAGAGGGCGTTCAGTTGCGATATGTGTTCGAGACTGTTCACAGAAAAACACAATCTAGATAGACATATGAGAATTCACCTAGGCGACCAACCGTACAGCTGCCAGATTTGTGCGAAGAAATTTCTATACGAGAGCGCCTTGCAACGGCATTTGAGGACCCACAAGCAAGAAAAAGAATTCAGCTGCGACGTTTGCTCGAGAATGTTTACGGAGAAACAGAATTTGGAGAGACACATGCGGTTGCATACGGGCGACCAACCGTATAGCTGCCACGTATGTAACAAGAAATTCTTATACGACAGTGGTCTACAACGTCACATTAACACACACAAGCAAGAGAAACCTTTCAGCTGTGATGTTTGTTCGAGATTGTTTGCAGAAAAACAAACTTTAGAGCGGCACATGAGGTTGCATATGGGTGACCAGCCGTACAGTTGTACTTTTTGTATGAAGAAATTCTTATTTGAAAGTCATTTGGATCGTCACATCAAAACTCACAACCAGGAAAAGCCATTTAGCTGTGATATTTGTTCGAAAATGTTTACTGAAAAACACAATTTAGTTAGGCACTTGAGAAAGCACGAAGACGACTAG
- Protein Sequence
- MITDTTYYETPAPDVQIQFCDERGANPDAKNVTIGSLSTISRDPLLDTAVTDTTHDVQSKILLEVKVENNLNDDEYSLPTSSQFIGSQENIVQGTVSAETIQHIKREIVIKSREQVKGRGHVRKKREKLHRCDECYRIFRFKSQLFDHLRTHRGDKPFSCDICSKAFKRISDLQRHSRVHTGERPFSCEVCFKCFKFKTDLYRHIKIHSVEKPLRCEVCPKKLKNKECLNRHMKLHLGNQKYSCHVCSKRFLYESDVHRHMKTHSQERAFSCDMCSRLFTEKHNLDRHMRIHLGDQPYSCQICAKKFLYESALQRHLRTHKQEKEFSCDVCSRMFTEKQNLERHMRLHTGDQPYSCHVCNKKFLYDSGLQRHINTHKQEKPFSCDVCSRLFAEKQTLERHMRLHMGDQPYSCTFCMKKFLFESHLDRHIKTHNQEKPFSCDICSKMFTEKHNLVRHLRKHEDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01248405;
- 90% Identity
- iTF_01248405;
- 80% Identity
- iTF_00404037;