Csei019317.1
Basic Information
- Insect
- Cyaniris semiargus
- Gene Symbol
- -
- Assembly
- GCA_905187585.1
- Location
- LR994558.1:14935150-14935530[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-11 3.2e-08 33.6 0.0 5 42 1 38 1 40 0.95 2 2 5.9 2.2e+03 -1.1 0.0 7 15 39 48 38 53 0.75
Sequence Information
- Coding Sequence
- ATGAAACTCGCTATAGAATCTTTAAGAAAAAAAACTATTGGATTAAATGAAGCGAGTCGAATCTATGGCGTTCCAAAAGCCACATTAAAAAGAAGATTGGACGGGAAAAACCAAAAAGCTATCGAAGAAGTTCAGATAGTGGGATCAGAAGGAGATCTCCCTGAAGCTTTAGAAACTGAATTAAGGAATCACATTGTTGAAATGGAGAATTCTTTGTTTGGTATTACTCCCAAAGATGTCAGAGAGCTTGCCTTCCAATTTGCTGAGAAAAATAAGATTAAAAATCGTTTTAATAAAACCAAAAAAGCTGCAGGGAAAAAATCCAGATATAAGTCTCCGTCAACCAAGAGCCACATCTATGAGCAGGGCAACTGGATTTAA
- Protein Sequence
- MKLAIESLRKKTIGLNEASRIYGVPKATLKRRLDGKNQKAIEEVQIVGSEGDLPEALETELRNHIVEMENSLFGITPKDVRELAFQFAEKNKIKNRFNKTKKAAGKKSRYKSPSTKSHIYEQGNWI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01248017;
- 90% Identity
- -
- 80% Identity
- -