Cbre013535.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- -
- Assembly
- GCA_036172545.2
- Location
- CM070087.1:33395561-33397475[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0076 39 4.3 0.0 17 45 98 126 91 134 0.81 2 10 5.5e-05 0.29 11.1 0.0 21 46 133 158 126 164 0.87 3 10 0.042 2.2e+02 1.9 0.0 22 52 162 192 158 194 0.81 4 10 0.00088 4.5 7.3 0.1 21 45 189 213 181 222 0.89 5 10 0.73 3.7e+03 -2.1 0.1 24 52 220 248 213 253 0.75 6 10 0.097 5e+02 0.7 0.0 23 48 247 272 234 278 0.85 7 10 5.2e-06 0.027 14.4 0.1 20 52 277 309 265 310 0.82 8 10 0.017 87 3.1 0.1 22 52 307 337 304 339 0.93 9 10 0.0013 6.5 6.8 0.1 21 48 362 389 355 393 0.85 10 10 2.6e-05 0.14 12.1 0.1 21 45 390 414 387 418 0.92
Sequence Information
- Coding Sequence
- ATGGATTTAAAGTACAGCGAGCAATTATTGTGGAAAAATCCCGCCCAAGTAATTAATGGTAGCCTAATGTTTCCTTCGCCGTCTTCGTCGACGTCGTCATCGGGTCCGAATCCCGCATCCGCAGCACTTCAACACGCGCCGCCACACCTTAATTtgctgcaacaacaacaaaacttgAATTTACAGCTGGCAGCTGCGGGAATCTCAAATCTCCGAGCCGCAAATCCCGTTTCGTCGAGCAATAATTTACCGAATGGCGTTCCTGTGTCGCATCACAACAGCACCGCGAATTCGAATAACTCGTCTCCGTTACCCGCAAAATGCAtgatttgtgataaaattttcccgACGCAAACCGAGTTGGAGCATCACATGAAGCAACATCAAGTAGCTGACGGCAAGAAACCTTTTACGTGCGAAATTTGCTCGAAATCCTTCATTCAGAGCAATAATTTGGCAACGCACATGCGAATTCACaacaacgagaaaaattaCGAGTGTTCGTATTGCGGCAAGAAATTTTCGCAGTCGAATAACATGAAGACGCATCAGAGGATCCATACGGGCGAAAAACCCTACGTTTGCAGCATTTGCGGAAGAGCGTTCAATCAAAAGAACAATTTGTCGACACACATCAAGACGCATTCGACAAATTTGCCCTTTATTTGTGGCACGTGCGGACTTACGTGCAAAAATACCACCGAACTCACGCAGCACATTCGCTATCACATGGATAGCAAGCCCCATATTTGCTCCGTGTGCAATATCGCCTTCATGATGGAAGATGAACTAACGAAGCACATGACGACGAAGCATCAGAACATCAAGGCGGGTCAGAGACCGTACACTTGCACAATTTGCCAAAAACAATTTACACAGTCAAATAATCTTAAAACGcacTTCAAAACACACGTCTTTGAAGATCCCTTCAAATGCAGTTTTTGTCACCGATCATTCCAACAAGCGGATGAGTATGAAGAGCACATTAAGATTCACGTGTACGACAAACCGTATGCTTGTCGTTTTTGtccgaaaaaattcattcaatcgAACAATCGAAACACCCATGAAAGGACTCACacaggcgaAAAACCGTATCTCTGTCCTCATTGCCCGAAATCCTTCAACCAGAAAAACAACCTGTCAACGCACGTTCGAATCCATACGGGCGAAAAACCCTTCGAATGCACAATTTGCCAACGACGCTTCAACCAGTCCAACAATTTGAACAAACATTTGAAGACTCACACGGAAATGGGAAAGATGCTTTGA
- Protein Sequence
- MDLKYSEQLLWKNPAQVINGSLMFPSPSSSTSSSGPNPASAALQHAPPHLNLLQQQQNLNLQLAAAGISNLRAANPVSSSNNLPNGVPVSHHNSTANSNNSSPLPAKCMICDKIFPTQTELEHHMKQHQVADGKKPFTCEICSKSFIQSNNLATHMRIHNNEKNYECSYCGKKFSQSNNMKTHQRIHTGEKPYVCSICGRAFNQKNNLSTHIKTHSTNLPFICGTCGLTCKNTTELTQHIRYHMDSKPHICSVCNIAFMMEDELTKHMTTKHQNIKAGQRPYTCTICQKQFTQSNNLKTHFKTHVFEDPFKCSFCHRSFQQADEYEEHIKIHVYDKPYACRFCPKKFIQSNNRNTHERTHTGEKPYLCPHCPKSFNQKNNLSTHVRIHTGEKPFECTICQRRFNQSNNLNKHLKTHTEMGKML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402981;
- 90% Identity
- iTF_00402981;
- 80% Identity
- iTF_00402981;