Cbre007293.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- Hr39
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:20638002-20640626[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2 1.5e+04 -10.7 14.6 122 160 188 227 11 335 0.60 2 3 7.3e-09 5.6e-05 22.5 0.1 1 45 402 445 402 471 0.69 3 3 5.3e-77 4.1e-73 246.9 1.1 185 408 501 721 460 721 0.89
Sequence Information
- Coding Sequence
- ATGGCATCCATTAATCCCGCAGGTCGTGGAAATGTGTCGGTAACGAATATCAATTGCCAGCAAAACAACTCGACAGACCCGTCGACGTCGTCGCATGGCGTGGATGTGATAGTTGCGGCGGCAAAACAGGAAAACAGTGGCAGCATTCGGATATCAGTGCCAAAAATGGAGGAATTCGAGGAGGAAAGTGAACTAGtgaaaattcaggaaaaaagtCAAGTTAACATGCGTGagcaacaacaaaagcaaaacaaCAATCCGCGTCCAATGTCGTGGGAAGGCGAACTCTCGGACAACGATGATGGCGCCATGGATGTCGAAAATACCATTATAAAAGACGAATCTCAGTCGGAGTCGATAGATTTGAGTGGAAGTGTCGTCATGAAAGAGCCTCCATTGTGTTTCAGTGACGCGGCTCCTGCAGCGGCGATACAGACAAAAACGGAAATGGACCCCAGTGTCATGGGAAAAATGAATCAACACTTCTTGAACAACACTTCTAAGAAATTGCCCGATCTGTCTGCCGTCAAATACGAGTTGGGTACGGTATCGGAAGCGCTAGTTGCCAATCAATCGCCCTTACTGGTGCgttcaaaatcaaatttactGCCAACGAACCCGAGTCCGGATTCGGCAATTCATTCGCTGTACACTCATAGTTCGCCGAGTCAATCGCCGTTAACGTCGCGACACGCTGCTTACGGCACGTCTTTGAGCCGGAACAACAGCGATGCTTCGTACAGCAGTTGTTATAGCAGTCCAACGAATTCGCCGATTCAGGGACGTCATCATCATCCAGCTGCCTACGGAAGTATGCAACATTCGTTGTACAAGCCACTTTTCGACAATTCCATGGGTGGATCCGTAGATATGTCGGCGAAATtccagcagcaacaacaacagcagcaatcGGATAGCGATCAAATGGGAACAACGGGCGACCAAGACTCTGTGCCATCTGCCGGAATATCGCGACAGCAACTCATCAACAGTCCGTGTCCCATTTGCGGCGACAAAATTTCCGGTTTCCATTACGGGATTTTCTCGTGCGAATCTTGCAAGGGATTTTTCAAGCGTACCGTGCAAAATCGCAAGAACTACGTTTGTCTACGAGGCGCATCGTGCGTCGTTTCGATCGCGACACGAAAAAAGTGCCCAGCCTGTCGCTTCGAAAAGTGCCTTAACAAGGGCATGAAGCTCGAGGCAATACGAGAAGATCGAACGCGAGGCGGTCGTTCCACGTATCAGTGCTCATACATACTGCCGAGCACACTTTTGGGTCCATCAACGTCTGCTGCCAACGATGCCGTCCACAATATGCAAAATCACAACGTGCAAAAGCTCCAAGCGGATGCCCTCAAGTACGGGGAAAATGCGAACAACAAGCAAATGTATCCGCATAACGTACGAATTCCGACGTTACTGCAAGAAATTATGGATGTGGAGCATTTGTGGCAATACAATGAGCAGGAACTGCAACGGTTGAATCAGACACCGCGAAATGTCTCAACGGAGTCTCTTACGCGGAATCCACTGCTTGCGAGTGCCGGTCTAAATGGCGAAAATTCCAGTCCTGACATGATTATCACGTTGTGCAATATTGCGGATCATCGTTTGTACAAAATTGTCAAGTGGTGCAAAAGTTTGccgttattcaaaaatatttcgATTGATGATCAAATCTGTTTGCTGATAAACTCGTGGTGTgaacttttgttattttcctgTTGTTTCCGATCGATCGACTCTCCGGGTGAGATAAAGATCTCGTTAGGGAAATCCATTACACTGGAGCAAGCAAAGGCGAGCGGTTtgcaggCATGCATTGAACGAATGTTAAACTTGGCAGACCATTTACGACGATTGCAAGTTGATAGATACGAATATGTGGCAATGAAAGTCATCGTTTTACTTTCCTcagACACATCTGAACTTAAAGAACCCGAAAAAGTTCGTGCTAGTCAGGAAAAGGCTTTGCAGGCATTACAGGCGTACACACTAGCACAGTATTCTCATATACCAGCCAAATTTGgtgaattacttttaaaaattccagaATTACAGCGAACATGCCAActtggaAAAGAAATGTTAACGATAAAGTCGAAGGAAGGCGAAGAGCCCAGTTTTAACTTATTGATGGAATTACTGAGAGGAgagcattaa
- Protein Sequence
- MASINPAGRGNVSVTNINCQQNNSTDPSTSSHGVDVIVAAAKQENSGSIRISVPKMEEFEEESELVKIQEKSQVNMREQQQKQNNNPRPMSWEGELSDNDDGAMDVENTIIKDESQSESIDLSGSVVMKEPPLCFSDAAPAAAIQTKTEMDPSVMGKMNQHFLNNTSKKLPDLSAVKYELGTVSEALVANQSPLLVRSKSNLLPTNPSPDSAIHSLYTHSSPSQSPLTSRHAAYGTSLSRNNSDASYSSCYSSPTNSPIQGRHHHPAAYGSMQHSLYKPLFDNSMGGSVDMSAKFQQQQQQQQSDSDQMGTTGDQDSVPSAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGASCVVSIATRKKCPACRFEKCLNKGMKLEAIREDRTRGGRSTYQCSYILPSTLLGPSTSAANDAVHNMQNHNVQKLQADALKYGENANNKQMYPHNVRIPTLLQEIMDVEHLWQYNEQELQRLNQTPRNVSTESLTRNPLLASAGLNGENSSPDMIITLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSIDSPGEIKISLGKSITLEQAKASGLQACIERMLNLADHLRRLQVDRYEYVAMKVIVLLSSDTSELKEPEKVRASQEKALQALQAYTLAQYSHIPAKFGELLLKIPELQRTCQLGKEMLTIKSKEGEEPSFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402795;
- 90% Identity
- iTF_00402795;
- 80% Identity
- iTF_00402795;