Cbre006895.1
Basic Information
- Insect
- Culicoides brevitarsis
- Gene Symbol
- sip1_1
- Assembly
- GCA_036172545.2
- Location
- CM070086.1:17817188-17819650[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-90 3.6e-86 288.9 16.9 2 275 383 648 382 648 0.98
Sequence Information
- Coding Sequence
- atgtcTGACGAGGAATATGAGAGATTTGAGATCACCGACTACGATTTGGACAACGAATTTAACCCGAATCGCAATCGCAAAAGACCAACAAAGAACCAAGCGATTTACGgTATTTGGGCTGATAATTCTGGCGATTCCGATGATTCTGGACCTGAATTGGGCGGGCGTCGTAAAAAAGGCTTCAAAGATTATTCAAAACCTTTGAATTTCGTCGCCGGAGGGGTTCAACAAGCCGGAAAAAAGCCTCCGTCACTCGTGCCGAACCaaataaaaggcaaaaaagaCGATGAAAGCGGAGATGAGGACGATGGCGAAGAAGAACGTGAACAAGCAACGAGCGAATCTGAACAAGAGGAAATGACGATGAACCATATGGCGGGTTTTCGTACGCGAAACTTCCGCCCGAGCAACATGCCCAAAGGAATGGGCGACTGGGAGGCCCATACGAAAGGCATTGGCAGcaaattgttgcaaaaaatgGGTTACGAGCCGGGAAAAGGTCTCGGAAAAGAGTTGCAAGGCATAAATGCGCCCGTTCAAGCTTTCTTACGTAAAGGTCGAGGCGCCATCGGAGCTTATGGGCCGGAAAAAGCAGCTCGAATCGCCGATCAAAAGCAAGTTGGCAAGAAAAAACTTGACGACGATGAAAAGGAAGCACTTgaattcaaggaaaaaatgtcacaatgGAAAGGCAAGGGTAACGACAAGAAACGCAAAGTACGTTATGTCTACAGAACCGTCGAAGAAGTCATCGCCAAGGGTCAAAAATCGAGTTACGGCATTCTGgatcaaaaaatgtcgaaagtaACGGTAATTGACATGACGGGACCCGAAAAAAGAGTTTTATCCGGGTATCATGCGCTTGGACAGGCAAAACACGAAGACGATATCGAGCGAaaggaaacgcaaaatttcgcCTTGCCCGAGCTGATGCACAATTTGAACTTGTTGGTAGACATGAGTGAACAGGAAATTATCGCACACGATCGACGACAACGCGCTGCCGAGACACGAATCGCCGAACTGGAacaagaaaaggaaaatttacacaaaattgtCGAGTTAGAGAAAGATTACCTCACAACACTCGAGTCTGCGTTGGAATTAgtcgaaaaaattgtcaaaccaACGGATGATTTGACACTCGAAGATGCGGAAAAAGTGTTTATTCAACTAAAAGTCAACTACCCCACGGAATATAAGGAGTTTCAATTGCAAGATTTGGTGCCAGGTGTCATCGCGCCTCTCGTAAATGCGTCGTTGCGACATTGGGAACCTTTTGAAAATCCAACCGAACCAATTTCGTTGATCAAAAAGTGGATGTCTTTGTTAGATATCAAGCCGCATGACTCAAAAGACATCTTCGATCCGTATTCCGTACTTATTTGGTCCGGCATTATCCCGAGAATTCGTGCTGCTTCGGGTAATTGGAATCCCCGACAACCGCATGAGATGGCGTCGTTACTTGATGCTTGGGCGCCCCTGTTGCCCGAATGGATTCTCGACAACATTCTCGATCAAATGGTTTTGGCGAAACTCACGTTCAGCGTGAACGAGTGGAATCCACTGACGGATCACGTACCAATTCACACGTGGATTCATCCGTGGGTTCAATTGTTGGGTGCGAAAATGCAAACGACCGTTTATCCGGTGATTCGTGACAAATTATCGAAAGCTCTCAAGGCATGGTCGCCCGAAGATCGCTCGGCTCGTTTAATGATCAACCCGTGGAAAGGCGTTTTCGCAGCTGACGACATGGAAGTCTTTCTCGCCAAAAATATCGTCCCAAAGCTGGAGCTGCGACTTCGTGAGCTGCAAATTAATCCGCTTCAACAGGAAATTGAGATTTTCAATCAAGTTTGGGAATGGCACGAAATCCTCTCATTACAAGTGATGGTCCATTTATTCGATCGGAACTTTTTCCCCAACTGGATGCAAATTCTAGTTGTTTGGCTGAATCAGAATCCCAACTTTAATGAAGTGTCGCGATGGTATCAAGGATGGAAATCGCAATTTAATGACGCCTTTCTGCAACATCCACAAGTTAAGGATCATTTTCGACGCGCTCTCGAACTTATGTCACGTGCATGCGGCGTCACAGCTCCGGATACAGATAACGTTCCAACGCCACCGCCTGCCCCCATTATCGGCGATAGTTTACCATCACTCATGGATATTCGGGTGGGAGCGCCGCCTCAGCTGGAATTCAAGGAAATTGTGTCGCAACGATGCGCGGAACGGGGAATTATTTTTGCGCCGATGCCCGGCAGGAGGGAAAATGGGAAGCAAGTTTATCGTGTCGGGAAGTTGTTTTGCTATATCGACAGGTCTGTGTGCGTTGTTAGTCAGGACGGAGGAAATCAGTGGAATCCGATGTCGGTGCAACAGATGATGGAAATTgcgtag
- Protein Sequence
- MSDEEYERFEITDYDLDNEFNPNRNRKRPTKNQAIYGIWADNSGDSDDSGPELGGRRKKGFKDYSKPLNFVAGGVQQAGKKPPSLVPNQIKGKKDDESGDEDDGEEEREQATSESEQEEMTMNHMAGFRTRNFRPSNMPKGMGDWEAHTKGIGSKLLQKMGYEPGKGLGKELQGINAPVQAFLRKGRGAIGAYGPEKAARIADQKQVGKKKLDDDEKEALEFKEKMSQWKGKGNDKKRKVRYVYRTVEEVIAKGQKSSYGILDQKMSKVTVIDMTGPEKRVLSGYHALGQAKHEDDIERKETQNFALPELMHNLNLLVDMSEQEIIAHDRRQRAAETRIAELEQEKENLHKIVELEKDYLTTLESALELVEKIVKPTDDLTLEDAEKVFIQLKVNYPTEYKEFQLQDLVPGVIAPLVNASLRHWEPFENPTEPISLIKKWMSLLDIKPHDSKDIFDPYSVLIWSGIIPRIRAASGNWNPRQPHEMASLLDAWAPLLPEWILDNILDQMVLAKLTFSVNEWNPLTDHVPIHTWIHPWVQLLGAKMQTTVYPVIRDKLSKALKAWSPEDRSARLMINPWKGVFAADDMEVFLAKNIVPKLELRLRELQINPLQQEIEIFNQVWEWHEILSLQVMVHLFDRNFFPNWMQILVVWLNQNPNFNEVSRWYQGWKSQFNDAFLQHPQVKDHFRRALELMSRACGVTAPDTDNVPTPPPAPIIGDSLPSLMDIRVGAPPQLEFKEIVSQRCAERGIIFAPMPGRRENGKQVYRVGKLFCYIDRSVCVVSQDGGNQWNPMSVQQMMEIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402766;
- 90% Identity
- iTF_00402766;
- 80% Identity
- -