Cbre012445.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Culicoides brevitarsis
Gene Symbol
-
Assembly
GCA_036172545.2
Location
CM070087.1:23569048-23571826[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.9e-10 1.5e-06 27.6 0.1 2 38 91 127 90 130 0.94

Sequence Information

Coding Sequence
ATGATACGAGACTTGAAGAACGCCGGACTTCAAATCGACTTCATGACAGCAGAAGATTACGTCAGTATTCGTCGTAGTGGGCACCATGAGCGGCATTTCgtaattttgaaggaaatgcAAGAGGAGGACGTTGATAACATTTTTCGTGTCGCAATTTCCATTTCCGGGAACAAACCGCTACCATCTCAAATGTTCAAAAAGATGGAATGTGGATTAATATGcaaaatggTTCGAAACTACAAACCAAAAACCGACAGACCCAAAATAAGTGAAGCCGACATCGCTGCTGCAGTCGAGGATGTGATTAAACATCAAATTTCCGTCCATCAAGCGGCTctgaaacataaaattaatcaacaaaCTCTCTATAGCCGCATCAGAAAGTTGCGTTCTGAAATCTCTTTGGATGGTTCTTCTCTTGAAAACATAGAAAACGTTCTTAATGATCCTAATATTTCAACAATTGTTACTCAAAAgactgctaaaaaaattttcacggaccaacaagaagaagaacttGCAAAATTCATTCTGGATCGTCCGGATCCGAATATCACAAGAACCCAATGTCGCGAAATCGCATATGAGTTTGCGAAGCAACAGGGTGTCGTTTATCCTTCATCTTGGGACAAAAATCAAATGGCAGGAATTGATTGGATGGATAACTTCCGAAAACGTCGACCAGAAATACAGTTGAAGAAGGCGCCAAAGACAATAAGAGCCGAAAATGCACAAAATAGTATGGAAGTTGATAGAAATAACGCGTTTTCTTGGAATGATTGGTCTTTTCCTGAACCTGAAAGTCCTCCAGAGATTCAAATTGCACATTGTTGTGGCTACGCTCACGAtgaattacaagaaaaagttgaagCGGGATTCCGTGATTTATATGAAGAAAATACCATTaatcatgaatttttggaACCTGAGATAATCAAATGGGAGCCCCCCATCAGATCTGAGTCCACAATTGTGGAAAATGACGAAATTGCACAAGAAAATTGCTCTATTTGCAATAAATTCTTCCCGGTTCGTCAAAAATCAGCAGGAAATGGTGAAATTACCTTCGATAAACACATGGTACTGGAACATTCGCTCAAAACTTTGAAGGCTTTTCGATGCACGATTTGTGATCTTTACTGCAACACCGAAGTCTATTTCTTAAATCACTTCCGGACCATTCATGAgggcaaacaaaaattatttttctgcgaATTTTGTccggaaaagtttttgttaaagCCAAAATTGGTCGCGCATGTGaagaaattccataaaaacgATGAAATTCGTCTCGTTTGTGACATTTGTCATCTTCAATTTCCTACAAAAGAAAAGTTGGAGAAACATATAGCGGCGAAACACATTAGTACAAGGGAATGTCCGTCGTGCCAcggtaaatttgaaaaaggcAGCAAATACATAAATCATCGAAAATCCTGCGGAAATATTTTCCAATGTCATCTTTGCTCGTCAAGCCTCGTCTCCGCTGCCGCTCTCGAGTACCATATAGCACGTTTCCACGTTCCTTCACCGCCTTGCGAAACTTGTGGCGAAACGTTCGCATGCCAGGCCGACTTGGATCACCACAAAAGACTCACTCACACGACAAAAACGCGAATTTGCGATCAATGTGGCGCCAGTTTCTACACAAGTGGCGGCCTAAAGAGACACATTCGGCACATCCACATGGGCATCAAACACTCAGAAACCGGGAAACAATCGTGGTGCCAAGTTTGCCAAAAACTCGAACCGCATCGCACCAAATTGAAGCACGAAAAGGAAGCGAAACACGGAAGACGTTACAAATGCGACCAATgcgaaaaaagtttcttctcaAATCTGAAACTGAAGAAACATTCTTATGTGCATTCGAAAACGCGTCCTTACAATTGCAAATTATGCGATACGGGATATTATCAATCGTCGTACCTGAAAGCGCATTATCAGAGAGTTCATAATTCGGAATATCTTGGGgcgaataaaaaatga
Protein Sequence
MIRDLKNAGLQIDFMTAEDYVSIRRSGHHERHFVILKEMQEEDVDNIFRVAISISGNKPLPSQMFKKMECGLICKMVRNYKPKTDRPKISEADIAAAVEDVIKHQISVHQAALKHKINQQTLYSRIRKLRSEISLDGSSLENIENVLNDPNISTIVTQKTAKKIFTDQQEEELAKFILDRPDPNITRTQCREIAYEFAKQQGVVYPSSWDKNQMAGIDWMDNFRKRRPEIQLKKAPKTIRAENAQNSMEVDRNNAFSWNDWSFPEPESPPEIQIAHCCGYAHDELQEKVEAGFRDLYEENTINHEFLEPEIIKWEPPIRSESTIVENDEIAQENCSICNKFFPVRQKSAGNGEITFDKHMVLEHSLKTLKAFRCTICDLYCNTEVYFLNHFRTIHEGKQKLFFCEFCPEKFLLKPKLVAHVKKFHKNDEIRLVCDICHLQFPTKEKLEKHIAAKHISTRECPSCHGKFEKGSKYINHRKSCGNIFQCHLCSSSLVSAAALEYHIARFHVPSPPCETCGETFACQADLDHHKRLTHTTKTRICDQCGASFYTSGGLKRHIRHIHMGIKHSETGKQSWCQVCQKLEPHRTKLKHEKEAKHGRRYKCDQCEKSFFSNLKLKKHSYVHSKTRPYNCKLCDTGYYQSSYLKAHYQRVHNSEYLGANKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00403234;
90% Identity
iTF_00403234;
80% Identity
iTF_00403234;