Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:155998853-156029486[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0039 15 5.6 0.1 22 43 103 124 95 133 0.85

2 13 0.0024 8.8 6.3 0.2 23 47 132 156 128 162 0.83

3 13 0.0053 19 5.2 0.1 23 48 160 185 156 190 0.85

4 13 0.002 7.3 6.5 0.1 23 48 188 213 185 218 0.85

5 13 0.0035 13 5.7 0.0 23 52 216 245 212 247 0.87

6 13 0.35 1.3e+03 -0.7 0.0 23 52 244 273 241 274 0.84

7 13 0.02 74 3.3 0.0 23 49 272 298 268 303 0.85

8 13 0.45 1.7e+03 -1.0 0.0 23 52 300 329 297 331 0.83

9 13 0.47 1.7e+03 -1.1 0.0 23 52 328 357 325 358 0.84

10 13 0.093 3.5e+02 1.2 0.0 23 52 356 385 349 387 0.86

11 13 0.021 76 3.3 0.0 23 51 384 412 380 414 0.84

12 13 0.03 1.1e+02 2.8 0.0 21 46 410 434 405 442 0.86

13 13 0.0001 0.39 10.6 0.1 23 44 440 461 438 465 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0039	15	5.6	0.1	22	43	103	124	95	133	0.85
2	13	0.0024	8.8	6.3	0.2	23	47	132	156	128	162	0.83
3	13	0.0053	19	5.2	0.1	23	48	160	185	156	190	0.85
4	13	0.002	7.3	6.5	0.1	23	48	188	213	185	218	0.85
5	13	0.0035	13	5.7	0.0	23	52	216	245	212	247	0.87
6	13	0.35	1.3e+03	-0.7	0.0	23	52	244	273	241	274	0.84
7	13	0.02	74	3.3	0.0	23	49	272	298	268	303	0.85
8	13	0.45	1.7e+03	-1.0	0.0	23	52	300	329	297	331	0.83
9	13	0.47	1.7e+03	-1.1	0.0	23	52	328	357	325	358	0.84
10	13	0.093	3.5e+02	1.2	0.0	23	52	356	385	349	387	0.86
11	13	0.021	76	3.3	0.0	23	51	384	412	380	414	0.84
12	13	0.03	1.1e+02	2.8	0.0	21	46	410	434	405	442	0.86
13	13	0.0001	0.39	10.6	0.1	23	44	440	461	438	465	0.91

Sequence Information

Coding Sequence: ATGTTTTACCCACTGCAACCAACGTTCGAGGATGGCGAGATCGAGCTGGCCCGGCCGGAGATGCTGAGCCAGGACGCGCTCGTCGACAACAAGCACTCGCTCGCGGTGTCCCTCTCGCTGGGCAACACATTAATCAATCTCAACAAAATCAAGTGTCCACAGTGCAGGAAGCGCTTCGATACGATGGAGGAGATGCAGCTACATCGCACCAAGCATCTCACCGAGAACAAGTTCAAGTGCGAGATCTGCAGCAAGGAGTTCCCTAGTCACAGCTCGATGTGGAAGCACACCAAGGCCCACACCGGCGACCGTCCTTTCGTGTGTCAAATTTGCAACAAGGGTTTCACGCAGCTGGCCAACCTGCAGCGGCACGATCTGGTGCACAATGGACTGAAGCCTTTCAAATGTCCAATCTGCGAAAAGTGCTTTACGCAGCAGGCAAACATGCTGAAGCATCAGCTGCTTCATACCGGGCTAAAACCTTACAAATGTCCCGTGTGCCAGAAAGCATTTTCCCAGCACGCCAACATGATCAAACATCAGATGCTGCATACAGGCTTGAAGCCCTACAAATGTCCCGTGTGCCATAAGGCCTTCACCCAACATGCCAACATGGTCAAACATCAGATGCTTCACACTGGTTTGAAACCGTACAAGTGTCCCGTTTGTGATAAAGCATTTACTCAGCAGGCCAACATGGTCAAGCATCAGATGCTGCATACCGGCGTAAAACCTTACAAGTGTTCCACGTGTGGCAAGGCATTTGCACAGCAGGCAAACATGGTCAAGCATCAGATGCTTCATACCGGGGTGAAACCATACAAATGTCCCACCTGTGGAAAAGCTTTTGCTCAACAGGCGAACATGATGAAGCATCAGATGCTCCACACCGGGTTGAAACCATACAAATGCAACACGTGCGGCAAGGCGTTTGCCCAGCAGGCAAACATGGTTAAACATCAGATGCTTCATACCGGCATTAAACCGTACAAATGCGGCACGTGTGGCAAAGCGTTTGCCCAGCAAGCCAACATGGTCAAACATCAGATGCTTCATACTGGAGTTAAACCCTACAAATGTTCCGTCTGCGGAAAGGCCTTTGCGCAGCAGGCCAACATGGTCAAGCACCAGATGTTGCACAGTGGAATCAAACCGTATAAATGTCCCACTTGTGATAAGGCATTTGCCCAGCAGGCCAACATGGTTAAGCACCAGATGCTGCACACTGGCGAAAAACCGTTCAAGTGCAAGAGCTGTGATAAGGCGTTCTCGCAGCGGGCCAACCTGAAGAAGCACGAGATGGTGCACCTCGGCATCCGCCCCCACACCTGTCCGCTGTGCTCCAAGTCGTACTCGCAGTATTCGAACCTGAAGAAGCACCTGCTGGTGCACCAGAAGCAGTCgctcaagcagcagcagcagaacggGCAGGTCATGGTCATCCTCTACAACTGCCAGACGTGCAAGATGCAGTTCGAGAACATCCTCGAGTTTGAGCGGCACACCAAGCAGTGCAACGAGCTGAACAACGGCGCCGCCAACGGAGGCCACGCTCTGAAGCTCGAGCACATCAACATCAAGAGCGAAATCGACATCGACGGCAGTTCGAGCTCGGGCATGACGCAGCACATCACGATCCCGCACAGCCAGTCGCAGCCGCCGATGCACATCCCGTCGGCCATCCTGACCTCGGTGATTTCGTCGTCCTCGGCTAGTGGCATCCACACGTTAAGCACCAGCCACGTCAACCATCACCCGGGTCATCCGCAGCACCCTCAGCAGCAGCACACTCCGCCCGCCGTCGGGCAACAtcctcaacagcagcagcagcagcagcaacaacaacaacagcaacagcaggcTCACCAGCAGCAGCTTCCACCGGTGAGcacccaccagcagcagcatccgTCGCTCCAGCAGCAACACAACGGACTGCCCATCCATCTGCAGCAGCAGCTGTCACACCACTTGATATCGTCACACCTGCCGCCCCACCAGGACCACCAGGATCTGCACCACCAGGTCAACTTCCACCATCCCCACATCCCGCACATCTCGAACCTGCCCCACAAGATCCTTTCCCCGCTGTTCCACATTCCGCCGTTCAACAACAACCACAGCACATAA
Protein Sequence: MFYPLQPTFEDGEIELARPEMLSQDALVDNKHSLAVSLSLGNTLINLNKIKCPQCRKRFDTMEEMQLHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGDRPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCQKAFSQHANMIKHQMLHTGLKPYKCPVCHKAFTQHANMVKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGVKPYKCSTCGKAFAQQANMVKHQMLHTGVKPYKCPTCGKAFAQQANMMKHQMLHTGLKPYKCNTCGKAFAQQANMVKHQMLHTGIKPYKCGTCGKAFAQQANMVKHQMLHTGVKPYKCSVCGKAFAQQANMVKHQMLHSGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQRANLKKHEMVHLGIRPHTCPLCSKSYSQYSNLKKHLLVHQKQSLKQQQQNGQVMVILYNCQTCKMQFENILEFERHTKQCNELNNGAANGGHALKLEHINIKSEIDIDGSSSSGMTQHITIPHSQSQPPMHIPSAILTSVISSSSASGIHTLSTSHVNHHPGHPQHPQQQHTPPAVGQHPQQQQQQQQQQQQQQQAHQQQLPPVSTHQQQHPSLQQQHNGLPIHLQQQLSHHLISSHLPPHQDHQDLHHQVNFHHPHIPHISNLPHKILSPLFHIPPFNNNHST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00108046;
90% Identity: iTF_00401373;
80% Identity: iTF_00401904;