Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:76349383-76351886[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0037 0.11 12.8 2.1 2 23 267 289 266 289 0.93

2 12 0.003 0.087 13.1 0.1 1 23 297 319 297 319 0.98

3 12 0.031 0.88 9.9 4.9 1 23 327 349 327 350 0.94

4 12 6.1 1.7e+02 2.7 0.4 2 23 403 425 402 425 0.89

5 12 9.2e-05 0.0026 17.8 0.2 1 19 458 476 458 477 0.97

6 12 0.00028 0.0079 16.3 0.2 1 23 489 511 489 511 0.98

7 12 0.00025 0.0071 16.5 2.9 1 23 519 542 519 542 0.97

8 12 0.0013 0.037 14.2 0.1 2 23 549 570 548 570 0.97

9 12 1.4 39 4.7 0.9 2 22 581 601 580 601 0.94

10 12 0.027 0.76 10.1 0.1 2 23 610 631 609 632 0.93

11 12 0.0086 0.25 11.6 3.4 1 23 638 660 638 660 0.98

12 12 5.3e-05 0.0015 18.6 1.3 1 23 666 689 666 689 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0037	0.11	12.8	2.1	2	23	267	289	266	289	0.93
2	12	0.003	0.087	13.1	0.1	1	23	297	319	297	319	0.98
3	12	0.031	0.88	9.9	4.9	1	23	327	349	327	350	0.94
4	12	6.1	1.7e+02	2.7	0.4	2	23	403	425	402	425	0.89
5	12	9.2e-05	0.0026	17.8	0.2	1	19	458	476	458	477	0.97
6	12	0.00028	0.0079	16.3	0.2	1	23	489	511	489	511	0.98
7	12	0.00025	0.0071	16.5	2.9	1	23	519	542	519	542	0.97
8	12	0.0013	0.037	14.2	0.1	2	23	549	570	548	570	0.97
9	12	1.4	39	4.7	0.9	2	22	581	601	580	601	0.94
10	12	0.027	0.76	10.1	0.1	2	23	610	631	609	632	0.93
11	12	0.0086	0.25	11.6	3.4	1	23	638	660	638	660	0.98
12	12	5.3e-05	0.0015	18.6	1.3	1	23	666	689	666	689	0.98

Sequence Information

Coding Sequence: ATGTCCCCCCCGTCATCGCAACTGGAAAGCTGCTTCACCTGTCTGCGCCGCACCGACAACTTCCTGTGCATCACGGAGCGGGACGAGGCCAGTGGCGAAGCCGTCGAGGCAATTTTCGCCAAACACTTTTGGTTTACCaaatgcGACTACCAAGATCGAACCGTTTGCACCAGCTGCTGGGAGAAGATTGACGAGTTTCACAAGTTTTACTGCGAGGTGGAACGGGTGCACGCGACGGAAGTGCTCGCTGAGATCAAAACGGAAGAGGAGGAAGATGACGAGGAGAATGCGTTGATGGTTGTGGAGTCGTCGGGGGATCAGGGCGAACCGGTTTGTAAGGTCGAGCTTAAGCAGGAAGTAGCTGGAAATCCAACTGAGCAGGTAGAGGGCCGTTCGGAAGATGGAGGAGACAATGCCCAGGCGAGTTCGCCGGAGGAGAATTCCGACGAGTCTGATTGGGATGTACCGCTGGCTCGGCGTGTGGCGAAAGTGAAGCAGAGGCGGAAACGGGCTTTGAAGAAGCGAGTTCAACGTGCCCGGTCGCGCAAGGAAAAGGCTGACAACGATGAGTTGAACGTCCTTATAAGGCAGCACATGGATATTACGTGCCACAAGTGTACGGAAGCCGGGACGGACAATGGGGAAACATTTGATTCTTTCTATCAGTTGAGGTTGCACTTTAAAAATCAGCACGACAACTCGTACGGTTACATTGTTTGTTGTAACCGAAAGTGGGTTTCGAAGCCCGGTTTGGCGGAACACTTGCAGAATCACGAACCAAGCAAGACAGACCACAGCCGATGCGTGGAGTGCAATTGCATCTTCAAGGACAAGAGTAGCTACGCGAATCACATGTTTCTAATGCACACGCCCGAGGAGCAGAAACAGTTCAAGTGCGATCGCTGTGCGAAGGCGTTCGCGGCGGAAGATCTGTTGAACAGTCATCTCAAGTGGCACGACGAGGTTGAGAAGAAGAATCATTACTGTGAAAAGTGCAACAAGTATTTCTTGAGCGCACGAAATCTGGAGAATCACATTTTTTCCCATCACAACGTTGGCGAGAGTTCGACCTCGATTCAACAACCCGCGGAAGCATTCGTCGAACAATCGACGGAAGAACCCGCACCGACTGGAACCGTCAAGGGCAAACGAACCGCCGAGGATGTCGCCAAAGAGGACGACCTGATTCGGCAATTCATCTCGCTAAACTGTTCCAAGTGTGACTTTGTGGGGGAAACGTTCAACAAGCTGTCCTACCATGCCCTCAAGGCGCACAACATGAACACCCATGCGGTCATTTGCTGCGACCGCCGTTTCGGCAAACGGCAACGGCTGTACGAGCACTGTCTGCGGCACCTCAATCCGGACCACTTCAAGTGTGAACTGTGCGGTAAAACGTACGCCGACAGTTCCGGGCTGCAGATTCACAAGTGGTGGATCCACACCCCGGTCTCGGAGCGGCCCTTCAAGTGCGATATCTGCGGAGCCGCTTTCGTCAAGGATTACCTCCTAAAGCAGCACACAAACTGGCACGTGAACAAGGAACGCAAGAAGTACTACTGCGAGTTGTGCAACAAGGCGTACTCGAACTCGCTCCAGCTGCGCGCGCATCACCAAAAGAAGCATGGCGCCGTGTGCGACTGGGTGTGCGATGTATGCGCGAAAGGATTCATCCATCGGGCACTGCTCGAAGAACACCGACTCACCCACACCGAAGAAGGACTCGCGAGTCTTAAGATCCAGTGCGAAAAGTGTCAACGCTGGCTGATTAACAAGAAGAGCTATTTGAGGCATCGTAGGCGCTGCTACGACACGTCCGGTCCGATCAAGTGTGACATTTGCGGAAAAGAGTCAGCGAACGAGGCGGCCCTAGCCGGACACAAGAACTTCCATCACTCGAATCGTCCGATGTTCCGGTGCACGTTCTGCGGCAAGGAGTGCAAGACGCAGCTGCGGTTGAAGGAACACGAAGCTACCCACACCGGAGTGGTGCTCTACCAGTGCCCGTACTGTCCGCGAACGTCCAACTCCAGCTCCAATATGTACACGCACAAAAAGACCGCCCATCCGGAAAAGTGGCAGGAGGAGGCCGACGCGCGGTCCTACACGAGGTAG
Protein Sequence: MSPPSSQLESCFTCLRRTDNFLCITERDEASGEAVEAIFAKHFWFTKCDYQDRTVCTSCWEKIDEFHKFYCEVERVHATEVLAEIKTEEEEDDEENALMVVESSGDQGEPVCKVELKQEVAGNPTEQVEGRSEDGGDNAQASSPEENSDESDWDVPLARRVAKVKQRRKRALKKRVQRARSRKEKADNDELNVLIRQHMDITCHKCTEAGTDNGETFDSFYQLRLHFKNQHDNSYGYIVCCNRKWVSKPGLAEHLQNHEPSKTDHSRCVECNCIFKDKSSYANHMFLMHTPEEQKQFKCDRCAKAFAAEDLLNSHLKWHDEVEKKNHYCEKCNKYFLSARNLENHIFSHHNVGESSTSIQQPAEAFVEQSTEEPAPTGTVKGKRTAEDVAKEDDLIRQFISLNCSKCDFVGETFNKLSYHALKAHNMNTHAVICCDRRFGKRQRLYEHCLRHLNPDHFKCELCGKTYADSSGLQIHKWWIHTPVSERPFKCDICGAAFVKDYLLKQHTNWHVNKERKKYYCELCNKAYSNSLQLRAHHQKKHGAVCDWVCDVCAKGFIHRALLEEHRLTHTEEGLASLKIQCEKCQRWLINKKSYLRHRRRCYDTSGPIKCDICGKESANEAALAGHKNFHHSNRPMFRCTFCGKECKTQLRLKEHEATHTGVVLYQCPYCPRTSNSSSNMYTHKKTAHPEKWQEEADARSYTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00401016;
90% Identity: iTF_00401016;
80% Identity: -