Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:205101135-205109704[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.3e-05 0.00095 19.2 2.1 2 23 220 241 219 241 0.98

2 11 8.8e-05 0.0025 17.9 0.4 1 23 249 271 249 271 0.98

3 11 2.8 79 3.8 0.1 10 23 275 288 273 288 0.93

4 11 0.0044 0.12 12.6 0.3 3 23 310 330 310 330 0.98

5 11 0.01 0.3 11.4 0.3 2 23 361 383 360 383 0.95

6 11 0.0029 0.083 13.1 2.0 2 23 399 420 398 420 0.97

7 11 0.00057 0.016 15.4 0.8 1 21 428 448 428 449 0.95

8 11 1.5e-05 0.00042 20.3 0.7 1 23 477 499 477 499 0.99

9 11 0.4 11 6.4 0.1 2 23 653 676 652 676 0.90

10 11 0.00044 0.013 15.7 0.2 1 23 684 707 684 707 0.98

11 11 0.00095 0.027 14.7 0.1 2 22 748 768 747 768 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.3e-05	0.00095	19.2	2.1	2	23	220	241	219	241	0.98
2	11	8.8e-05	0.0025	17.9	0.4	1	23	249	271	249	271	0.98
3	11	2.8	79	3.8	0.1	10	23	275	288	273	288	0.93
4	11	0.0044	0.12	12.6	0.3	3	23	310	330	310	330	0.98
5	11	0.01	0.3	11.4	0.3	2	23	361	383	360	383	0.95
6	11	0.0029	0.083	13.1	2.0	2	23	399	420	398	420	0.97
7	11	0.00057	0.016	15.4	0.8	1	21	428	448	428	449	0.95
8	11	1.5e-05	0.00042	20.3	0.7	1	23	477	499	477	499	0.99
9	11	0.4	11	6.4	0.1	2	23	653	676	652	676	0.90
10	11	0.00044	0.013	15.7	0.2	1	23	684	707	684	707	0.98
11	11	0.00095	0.027	14.7	0.1	2	22	748	768	747	768	0.95

Sequence Information

Coding Sequence: ATGGAAAATCCACCACCTACCCGGGTGAAACCTCCCCAGCTGGATGACTTTTGCCGCATTTGTATGCTGCGAAAGCCTTCGCTCCGTCCGCTGGCGGTCCCGCTCTCCGGCGTAATGGTTCCGGAGATGTTGTACAAGGTAACCGGCACGATGCTCAACTTGCAGGAACAGCTGCCGCGGGTCATTTGCGAGCGGTGCCTCGTGAAGCTTGAGCTAGCGTTCAGCGTCGCCGAAGAGTTCCGCCGGCAGGAGGAGAAGCTACGACTGTTTTGGTTTAAGGGGGGTGTGCTAGTGGATGAGTTGGTGGCGTACCAGCGGACGGAGGAGTCACGGGTGAAGGGGCACTCGGAGGAAGTTATAGAGAGGTTGACGGTTGGCCGATTGGATCCGGTTGACAATGATACGATTCTTAAGCAAGACCTGGAAGTAAAACAAGAAGCATCGGAATTTTGTATTGAGATCCTGTCGGATGATTCTGCGGACGAACAGCAGCAACCCGATGTTGGCGACCCTCCGTCCCCAGCGGAATCCGAACTGGAACAGGACGATAATGTCAACGATTCGGATTACGTACCTGATGACATGGTCCAGCTCGATGAGGACGGTTACTCCGACTCTTCGCATGCCGATGTACCGAGACTTGGAAAAGAGGCAACGAAATGTCCGGTGTGCAGTAAAGAGTTTAGTACGACGTTGTCTTTGAAGCGCCATTACAGACGGCACGTTATCCGAGCGAAAGAGAAATTCAAATGCACAAAGTGCGATAAAGCATTAGCATCCCAACAAGAGCTGGAACTCCATCAATTGTCTCACTCAAACCCATTCAAGTCCCAACCACGCCTGCGAGCGCATCAGAAGATTCACGAGCAGCGGAAGGTTCCGTTGCCGTCTCCATCCTTTACCGGAAAGAAGAAATTTTGGTCCTGGTGCAAGTTTTGTGGGAAGGGCTTTGGCCGGGAAGATCGTTTAGAGCAGCACGAAGCAACGCACGAAAAAGGGCGGTCCGACGGAAACGCCCCGGTAAACGTTTATCACAAGTTGGAGCAAATACTTGCGAAGCAGAGACAAAAGCAGCAAATGGAGTGCGAGTTTTGTCCAAGGACACTCCGGAACGAAACTGAACTGGCGCAACACTTGGAAAAGCGTCATAACGACCAGTTGTACGAAAAGTCTGACAACGCTGACGGTCGCCTAAAATGCTCCAGATGTGGACGAACATTCGAGAACGATTATAAATTCGGGATGCACATGAAGAAGCACGCAAACGTTGACAGTGGTAAATTCAAGTGCGTTAATTGTGACCACGCATTCGGAACCAAATTCGAACTGCTGAGACACATGCTCCGGTACGAAAAACAATCGGAGTGGCAAAAGGCTTGTGAGAAGATGACGCCCCCGCTCACGATCGACACAGGCGGAAAACCCTTCTTCAAGTGCCCCGTCTGTGACAACGTGTTCGTCTCGCGATCGAACTACTTCCAGCACGCGCAGACTCACACCGAGGGCTGGCCGAAAGCGCAAAGAAAGTCCAACTCGGTTGGGAAAGCAGAGTCATCAGGCGCCACGACGGTTCTGTTTTCGTCGCAGGAGAGCTACGAAATCCATCTGCAGCAGGGACATCGGGACGAAGGAGCACCTGGAGAGCCGGCCAACCAAGAATCTGACCATCCCTCCGATCTACCCATCATTCGAGAAGTGGCGGGTTCTTACGTCAAGGAGGAAGTACCTATCGAAGAAAGTCACACTGCTCACGAGATCCTCCCAATGGCTGAGTATGAGCGGGAACCGCCGAAACCGGAGCAAATCGTTAACAAAATGGAAACCGATCACGACGAGGTCGATAACCTAGGTTCAGAATATGCGACCGAGTTTAGCATCGAAATGCTGTCGGATGATTCGGACGATGAAGCGCTCGAACCGCCCACCAGTGGCGCCGAGTCCACGTCCAAATCATGGAAGTGCAACATCTGTGGCATTGTAATCAACACGACAACGGACGCTTCCGTCACGAGGCACATGCTGATGCACGAAAACATCCAGAATGGGGCGTACGAGTGTGAAGTTTGTAACAAGCGATATGGTTTCAACCCGGGCCTTCAGCAGCATAGACGAATTGTTCACAATTTGAAGCCACAAGCGTCGGATGATTCCTTTGAGTGTGAGCAGTGTAAGAAGTACATCAAGAAGACTAAGTACACCTTTCATCTCAGTTGTCATAGAAATATTAAGTTGCGTACTATCGTGTGCGAAAAGTGTGATAAGGCGTTTGGCGCGAAGCAATATCTGCAGAGCCACATGATGACAAGAGCGTGCGAAAAAATCAGCCGAAGTCAGAGCCGGAACACGCTGTAG
Protein Sequence: MENPPPTRVKPPQLDDFCRICMLRKPSLRPLAVPLSGVMVPEMLYKVTGTMLNLQEQLPRVICERCLVKLELAFSVAEEFRRQEEKLRLFWFKGGVLVDELVAYQRTEESRVKGHSEEVIERLTVGRLDPVDNDTILKQDLEVKQEASEFCIEILSDDSADEQQQPDVGDPPSPAESELEQDDNVNDSDYVPDDMVQLDEDGYSDSSHADVPRLGKEATKCPVCSKEFSTTLSLKRHYRRHVIRAKEKFKCTKCDKALASQQELELHQLSHSNPFKSQPRLRAHQKIHEQRKVPLPSPSFTGKKKFWSWCKFCGKGFGREDRLEQHEATHEKGRSDGNAPVNVYHKLEQILAKQRQKQQMECEFCPRTLRNETELAQHLEKRHNDQLYEKSDNADGRLKCSRCGRTFENDYKFGMHMKKHANVDSGKFKCVNCDHAFGTKFELLRHMLRYEKQSEWQKACEKMTPPLTIDTGGKPFFKCPVCDNVFVSRSNYFQHAQTHTEGWPKAQRKSNSVGKAESSGATTVLFSSQESYEIHLQQGHRDEGAPGEPANQESDHPSDLPIIREVAGSYVKEEVPIEESHTAHEILPMAEYEREPPKPEQIVNKMETDHDEVDNLGSEYATEFSIEMLSDDSDDEALEPPTSGAESTSKSWKCNICGIVINTTTDASVTRHMLMHENIQNGAYECEVCNKRYGFNPGLQQHRRIVHNLKPQASDDSFECEQCKKYIKKTKYTFHLSCHRNIKLRTIVCEKCDKAFGAKQYLQSHMMTRACEKISRSQSRNTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400925;
90% Identity: iTF_00400925;
80% Identity: -