Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:85993164-86010962[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.028 0.79 10.0 0.5 2 23 184 206 183 206 0.96

2 14 0.35 9.9 6.6 0.6 6 23 215 233 215 233 0.98

3 14 2.7 76 3.8 0.4 1 21 245 267 245 270 0.88

4 14 0.0083 0.24 11.7 0.2 1 23 278 300 278 300 0.93

5 14 0.00052 0.015 15.5 2.7 3 23 310 331 308 331 0.94

6 14 0.15 4.3 7.7 0.2 3 23 410 431 408 431 0.96

7 14 2.8e-05 0.0008 19.5 0.4 1 23 463 486 463 486 0.94

8 14 9.8e-05 0.0028 17.8 0.9 1 23 494 516 494 516 0.98

9 14 6.4e-06 0.00018 21.5 0.3 1 23 524 547 524 547 0.96

10 14 6.8e-05 0.0019 18.3 0.5 2 23 554 575 553 575 0.96

11 14 1.4 39 4.7 1.8 2 22 586 606 585 606 0.94

12 14 0.13 3.7 7.9 0.1 2 23 614 636 613 636 0.93

13 14 0.0016 0.047 13.9 0.8 1 23 642 664 642 664 0.93

14 14 0.00073 0.021 15.0 2.4 1 23 670 693 670 693 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.028	0.79	10.0	0.5	2	23	184	206	183	206	0.96
2	14	0.35	9.9	6.6	0.6	6	23	215	233	215	233	0.98
3	14	2.7	76	3.8	0.4	1	21	245	267	245	270	0.88
4	14	0.0083	0.24	11.7	0.2	1	23	278	300	278	300	0.93
5	14	0.00052	0.015	15.5	2.7	3	23	310	331	308	331	0.94
6	14	0.15	4.3	7.7	0.2	3	23	410	431	408	431	0.96
7	14	2.8e-05	0.0008	19.5	0.4	1	23	463	486	463	486	0.94
8	14	9.8e-05	0.0028	17.8	0.9	1	23	494	516	494	516	0.98
9	14	6.4e-06	0.00018	21.5	0.3	1	23	524	547	524	547	0.96
10	14	6.8e-05	0.0019	18.3	0.5	2	23	554	575	553	575	0.96
11	14	1.4	39	4.7	1.8	2	22	586	606	585	606	0.94
12	14	0.13	3.7	7.9	0.1	2	23	614	636	613	636	0.93
13	14	0.0016	0.047	13.9	0.8	1	23	642	664	642	664	0.93
14	14	0.00073	0.021	15.0	2.4	1	23	670	693	670	693	0.97

Sequence Information

Coding Sequence: ATGACCGAGGAAAGCCTGCTGCAGGACTGCCTCACCTGTCGGCGCAAGACGGAAACTTTCCTCCGAATTCGGAACGACATCGCCGATGACGAAGATACCGTCGAGTCCGTCCTCGCGAAGCACTTTTGGTTTGAGGCCATCCAGTACCGCGACCGGGTGCTGTGCACCAGCTGCTGGGAAAAGATCGACGAGTTTCACAAGTTTTACTGCGAGGTCGAGGAGCGATGGGGACTGCACGTGGAGGTCAAAACAGAACAGCTGGAGGAGGAGGGCGTTGCTTCCGAGGTGGTTAAGGCTGAACGGTTGGAGTCGGATGGGGGAAGTTTTGGGGAGGATTCGGACGGAGATTTTGAGCCGGGTGAAGCGAAGATGGAACTTCCGGATGATTTTTCTGAGGATTCGGAAGAGGAGTCTACGACTCCAATAGCTAAGAGGAAACGGTCCGCGCGGGACGAAGGAACGGGTTCAGGGCGTAAAACAAGCTACGTCCGGTCGCACAAGCGAGCTAACCGGGAACGGAACGACCTGATTGCGAAATACGTCCAGCTTCAGTGTGACATTTGCAGCGAACGGTTCGCGACCTTTCCCCGGCTGCTTCTACACTACAAACGGTCCCACGAAACGCAAGGGTACGTGACCTGCTGCGAGAAAGTGTTCCACAAGCGGTCCGTACTTGTCGAACATCTCCGAAAGGTGCACGAATTTGTCGCCGGTGGCGATGACGAGTCTCAGTTCCGGTGTGAACTTTGCGAGCCGGTGAGGAACTTCAAGGACGAAGAGGGACTTCAGCTGCACAACGTGGTTTGTCACACGGCGGAGGGAGAGCGGATCTACAAGTGCGACCAGTGCGAGAAGGCGTTCGACAGCGAGTGGGCCCTGAGTGGACACAAGTACTGGCACCAGAACATTGAGAGCTTGAACATTTGCTGCGAAAAGTGCAATAAATAttTCAATTCCGCCCGCACGCTCAACACTCACATACGTGCCTTCCACCCGGAAGGCACCACCACAACATCCTCATCCTTCTCGACGACGATGTCCACCGACGCCATCACTATGGCCGAACCAACACTCCCAGATCAGCTCATTGCCGGAGCTGCTCCGGAAGATTCATTCAAAGCCCCAAGCCAATCGGCGCGAGCCACCTCAGCCACCCGGAAGGCGCCCAAATCCGCCGAAGAGCTGGCCCAAGAGGACGACCTGATTCGGCAGTTTTGCACGCTGCTCTGCGAAAGCTGCGACTTTGTTGCGGACAGCTTCTACACCCTCGAGCGGCACTACAAGACGGAACACGACCAGCGCGGGTACGCCATCTGCTGTGGGCGAAAGTTTTGCAAGAAGCGCCGCCTGTACGAGCACTGCCAGCGGCACGTCAATCCGGACGCGTTCCGGTGCGAAGTGTGCAACAAGTCGTTCACCGAGAGCGACGGGCTGGAGAAGCACAACAAGTGGGTCCACACGCCGGACTCGGAGAAGCCGTTCAAGTGTGAGATCTGCGACGCGGCGTTCTACAAGGACTATCTGCTGCGAAACCACATGAAGTACCACATCTCGATGGAGCAGAAGATTTTCAACTGCAAGGATTGCGACAAGTCCTTCGGCACGGCGGTCCTGCTGCGGGCGCACCAGCAAAATATCCACGGCGCCGCGTCCAGCTGGGTTTGCGACATCTGCGCCAAGGGGTTCGTGCACAAATCCCAGCTCGAAACGCACCGCCTCTCGCACTCCGAGGAGGGCGCGGCCAGCCTGAAAAAGCAGTGCGAACGGTGCAAAAAGTGGCTCAAAAACAAGGACACGTACACGAACCACCTGAAGCGGTGCCTCGCCGGAGGTCCGGTTACGTGTGACATTTGCGGCAAGGAGGCGGTCAACGAGCTGGCACTGGCCTCGCACAAGCGATTCAACCACGAGGACAAACCGGCCTTCGCGTGCAGCTACTGTGGGAAGCAGTTTAAGCGGCTGCTGCGGCTCAAGGAACACGAAGCGAATCATCGCGGCGAGTTGCTCTACTCGTGTCCGTACTGTCCGCGGCAGTGCAACTCCAGCTCGAACATGTACACCCACAAGAAGGTGGCCCACCCGGAGCTGTGGGCTGCCAAGGTGGCGGACAGGTACTACAAGCGATGA
Protein Sequence: MTEESLLQDCLTCRRKTETFLRIRNDIADDEDTVESVLAKHFWFEAIQYRDRVLCTSCWEKIDEFHKFYCEVEERWGLHVEVKTEQLEEEGVASEVVKAERLESDGGSFGEDSDGDFEPGEAKMELPDDFSEDSEEESTTPIAKRKRSARDEGTGSGRKTSYVRSHKRANRERNDLIAKYVQLQCDICSERFATFPRLLLHYKRSHETQGYVTCCEKVFHKRSVLVEHLRKVHEFVAGGDDESQFRCELCEPVRNFKDEEGLQLHNVVCHTAEGERIYKCDQCEKAFDSEWALSGHKYWHQNIESLNICCEKCNKYFNSARTLNTHIRAFHPEGTTTTSSSFSTTMSTDAITMAEPTLPDQLIAGAAPEDSFKAPSQSARATSATRKAPKSAEELAQEDDLIRQFCTLLCESCDFVADSFYTLERHYKTEHDQRGYAICCGRKFCKKRRLYEHCQRHVNPDAFRCEVCNKSFTESDGLEKHNKWVHTPDSEKPFKCEICDAAFYKDYLLRNHMKYHISMEQKIFNCKDCDKSFGTAVLLRAHQQNIHGAASSWVCDICAKGFVHKSQLETHRLSHSEEGAASLKKQCERCKKWLKNKDTYTNHLKRCLAGGPVTCDICGKEAVNELALASHKRFNHEDKPAFACSYCGKQFKRLLRLKEHEANHRGELLYSCPYCPRQCNSSSNMYTHKKVAHPELWAAKVADRYYKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400917;
90% Identity: iTF_00400917;
80% Identity: -