Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:88163733-88168329[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00017 0.0048 17.0 2.6 1 23 224 246 224 246 0.98

2 14 9.8e-06 0.00028 20.9 1.9 2 23 253 274 252 274 0.97

3 14 0.00048 0.014 15.6 1.2 1 23 280 303 280 303 0.97

4 14 0.1 2.9 8.3 0.1 1 23 309 333 309 333 0.96

5 14 0.0019 0.054 13.7 5.6 1 23 339 361 339 361 0.98

6 14 0.0019 0.054 13.7 1.3 2 23 368 390 367 390 0.94

7 14 0.067 1.9 8.8 0.4 2 23 399 421 399 421 0.91

8 14 0.033 0.94 9.8 0.8 3 23 725 746 724 746 0.90

9 14 0.00058 0.017 15.3 1.6 1 23 752 774 752 774 0.99

10 14 3.1e-05 0.00088 19.3 1.2 1 23 780 803 780 803 0.97

11 14 2e-05 0.00056 20.0 0.5 1 23 809 832 809 832 0.97

12 14 0.65 18 5.7 2.6 2 23 841 862 840 862 0.97

13 14 0.12 3.5 8.0 0.6 2 23 869 891 868 891 0.92

14 14 0.015 0.44 10.8 0.4 2 23 900 922 899 922 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00017	0.0048	17.0	2.6	1	23	224	246	224	246	0.98
2	14	9.8e-06	0.00028	20.9	1.9	2	23	253	274	252	274	0.97
3	14	0.00048	0.014	15.6	1.2	1	23	280	303	280	303	0.97
4	14	0.1	2.9	8.3	0.1	1	23	309	333	309	333	0.96
5	14	0.0019	0.054	13.7	5.6	1	23	339	361	339	361	0.98
6	14	0.0019	0.054	13.7	1.3	2	23	368	390	367	390	0.94
7	14	0.067	1.9	8.8	0.4	2	23	399	421	399	421	0.91
8	14	0.033	0.94	9.8	0.8	3	23	725	746	724	746	0.90
9	14	0.00058	0.017	15.3	1.6	1	23	752	774	752	774	0.99
10	14	3.1e-05	0.00088	19.3	1.2	1	23	780	803	780	803	0.97
11	14	2e-05	0.00056	20.0	0.5	1	23	809	832	809	832	0.97
12	14	0.65	18	5.7	2.6	2	23	841	862	840	862	0.97
13	14	0.12	3.5	8.0	0.6	2	23	869	891	868	891	0.92
14	14	0.015	0.44	10.8	0.4	2	23	900	922	899	922	0.94

Sequence Information

Coding Sequence: ATGTCCTCCGAGGGCGACGAGCAGGAACTAGAGCTATGCCGCGTTTGCGCCAACCCGTTCGAAATCTGCACCATGTTCCGGCTGTTTGACGATGCGGAACTGGCCGACATCTTCTGGCTGGTGTCCGGCATCGAGGATCGTGATGTCGATTTCAAGCTTCCGGAAAGCTGCTGCCAGGGCTGTAAGCAACGGCTACAAGAGGTGGCGGATTTGCGGGACTTGTGCCAGGAGTCGGAtcgaaagctgagaaaaattaTAGACGGAAGTGACGCCGGAACTATTCTTAAGCTGGAAATACTTCAGCTTTCACAGTCGTGCTGGGAAGATAGTGGAATCGTGGCCGGTTCTGATGATGAACAAAACGAAATGGTTCACATTGAGGAGGAATTAGAGGAACTCATTCCAAATGAAACAAAGCCTGAATATATCGATAATGAAAATGCCGAAGAGTCAAACGTATTGCTCAATCTAGAGGATGAAGTAATGCGTATCGAGCCGGATAATGATAACTCAGAACATGAAACCATATTAGAAAAGCCAAAGAGTACAACCAAGAGAAAAGAATCTGTATCGCAACCTAAAAAACGTGGTCGAAAACCAAAGCATCTAGTCTCCGAGCCAAATAACGATGGCTTGAAAAAGACAACTAAACGCAAGTTGCCCAAAACATATCAATGTGCTTCGTGTGGTCGTACTTTCAAATCTTTGCACTCTCTGAAGGAACACGAAACAACTCATTCGCCAGAAAAAGCCTGGAAATGCCACATTTGCCCGAAGGAATTCGGTCGACGTGATTACTACAAACGCCACATCAACATGCACGAAACCGAGGGCCAATTCAAATGCAACGAATGTGACAAAGCCTTCCACGCGGACAAGCTACTGCAGGAGCACATTCGCATAAAACACGTCGGAGATCGTCCCTTCAAATGCAAACTGTGTCCAAACGCGGCCTACGCACGCGCCTCGTCCCTGTACGCCCACGTTAAAATCAATCACGAGAAGAAGCAACCCTTCAAGTGTGACATCTGCTTGCGCACGTTCTACTCCAAAAACTGTCTGGAACGACACAAAAACCGCCACAACGGCATCAAAACAAGCCAGTGTCCGCACTGTGCGAAGCGTTACGAGTCCAACAACTATCTCCAGCAGCACATTGCCCAGCGGCATCCGGAACGGGCGCACGATCTGCCCCAGTGCCAGTACTGTGGCGCTCCGTACAGTGCCGACAGTCACTACCGGAAGCACGTGGCGGCGAAGCATCCGGAGCACTTCGAGGCGTTTGAGCTCTGGTTGAAGGCGAAGCGGAAGGCGATGGGGCCCGCTTGGCGTAGGTTGATCTCAAAGAGCTACCAACTCGGCTCGTTGGTAAACAGATTCTCCCGTTCGACAAGCCCGTGCTGCCGAGGCCGACTTTCTCCGCCCGCTACCATGTCTTCCGTCGAGGCCCTGCTCCTGTGCCGGGTTTGTGCCAACCCGGCCGACGACTCCGCCATGTTCCGGCTGTTTGACGACGCGGATAGGCCGCTGGCGCTGGCGGAGATCTTCCTGCAGGTGTCCGGAATCGCCATCCAGGTCGGGGATTCGAAACTTCCGAAAAGTTGCTGCCAACGGTGTCGGGACAGGTTGCAGGAGGTGGAAGATTTGAGGTCGTTGTGCCAGGAATCGGACCAGAAGTTGCGCAAAATGATTGGCATTACggtgaaggaggaggaggacagtGAGGAACAAAACGGGAATGATGTGGATGCGATTCCGAAGGTGGAAATGAACCAGCTGGATTCGGATGATAGCCGGAGTGAATCATCGGACGATGAAAAACCTTTGAAATCCAGGAAAGCGAAGAGAGAAAGGTCTGAGAGTAGGACGAAAATGGAGGAAAGAGATTGCTTTTCAGAGGATGACCCGGATGAAGATCCAGATTTTATGGCGAAAAACAGTCCGAAAAAGGTTGGGAGAAAAAGGAGAGAGGAGATTATCAGTGATGAACCTAAAATCCCGAAAAAGCGCGGTCGGAAaccCAAGATCCGAGATCCAGCATTGGAAGCCATtccaaaagtttataaaaagcGTGGTCCAAAACCCAAAAATCGAGATCCTAACGCAGACCCGGAGGAGGAGAAGGAGcggaaaaagaaagaaaagaagGAAAAGGTCCAGCAGGAATCACTATGTTGCATAGTGTGCGGGAAAGTGTACAAATCTCTGTTTGCCCTGCGAGAACACGAAACATCCCACTCGAATGAAAAGCGCTTCAAATGCGAGATTTGCTTGATGGAGTTTGCTCGGCGGAACAACTACAAATTGCACCTGAAACGGCACGAAACGGAGGGACAGTTCAAATGCAACGAATGTGACAAATCATTCTACCTGGAAAAGCTGCTCACCCAGCACATCCAGATACGGCACCGCGGCGAGCGTCCTTTCGCGTGCAAGTTCTGCCCGAAAACGTATCCCCGGGCATCGTCGCTGTTCATGCACGTCCGAACGATCCACGAGGGCATCAAGAAGAAAACGATGAAGTGCGACATTTGCATGCGACAGTTCGTGTGCAAGTACGGCTACGAGCGCCACATGAACAGCCACAAGGGCATCAAGTTGAACCAGTGTCCGCACTGTGGCAACAAGTACGAGTTTAAGGCGTACGTACTGCAGCACATTGCCGAGAAGCATCCGGAAACGGTGCCGAATCTCACCCGGTGTCAGTATTGCGGCGTCGGTTACAGCTCGGACGGATACTATCGAAAGCATATCGTCAAGCGGCATGCGGAGCATTTGGCAGAGTTCGATGTGTGGATGAAGGCAAAGCGCGAGGCGTTGATGTTTCCCGGAAAGCAGGCCATACCGGTCGTTGACGCCGTTGCCAGTGCGGAACCCACACCGTGTCAGGAAACGGCTGCGTCTTTCCCTGAAAAGACTAGTATTAATTAA
Protein Sequence: MSSEGDEQELELCRVCANPFEICTMFRLFDDAELADIFWLVSGIEDRDVDFKLPESCCQGCKQRLQEVADLRDLCQESDRKLRKIIDGSDAGTILKLEILQLSQSCWEDSGIVAGSDDEQNEMVHIEEELEELIPNETKPEYIDNENAEESNVLLNLEDEVMRIEPDNDNSEHETILEKPKSTTKRKESVSQPKKRGRKPKHLVSEPNNDGLKKTTKRKLPKTYQCASCGRTFKSLHSLKEHETTHSPEKAWKCHICPKEFGRRDYYKRHINMHETEGQFKCNECDKAFHADKLLQEHIRIKHVGDRPFKCKLCPNAAYARASSLYAHVKINHEKKQPFKCDICLRTFYSKNCLERHKNRHNGIKTSQCPHCAKRYESNNYLQQHIAQRHPERAHDLPQCQYCGAPYSADSHYRKHVAAKHPEHFEAFELWLKAKRKAMGPAWRRLISKSYQLGSLVNRFSRSTSPCCRGRLSPPATMSSVEALLLCRVCANPADDSAMFRLFDDADRPLALAEIFLQVSGIAIQVGDSKLPKSCCQRCRDRLQEVEDLRSLCQESDQKLRKMIGITVKEEEDSEEQNGNDVDAIPKVEMNQLDSDDSRSESSDDEKPLKSRKAKRERSESRTKMEERDCFSEDDPDEDPDFMAKNSPKKVGRKRREEIISDEPKIPKKRGRKPKIRDPALEAIPKVYKKRGPKPKNRDPNADPEEEKERKKKEKKEKVQQESLCCIVCGKVYKSLFALREHETSHSNEKRFKCEICLMEFARRNNYKLHLKRHETEGQFKCNECDKSFYLEKLLTQHIQIRHRGERPFACKFCPKTYPRASSLFMHVRTIHEGIKKKTMKCDICMRQFVCKYGYERHMNSHKGIKLNQCPHCGNKYEFKAYVLQHIAEKHPETVPNLTRCQYCGVGYSSDGYYRKHIVKRHAEHLAEFDVWMKAKREALMFPGKQAIPVVDAVASAEPTPCQETAASFPEKTSIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400907;
90% Identity: -
80% Identity: -