Cpip009003.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:131387366-131391272[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00026 0.0078 17.1 2.6 1 23 224 246 224 246 0.98 2 14 4.5e-06 0.00014 22.6 1.8 2 23 253 274 252 274 0.97 3 14 0.00072 0.022 15.7 1.2 1 23 280 303 280 303 0.97 4 14 0.16 4.8 8.4 0.1 1 23 309 333 309 333 0.96 5 14 0.0029 0.088 13.8 5.6 1 23 339 361 339 361 0.98 6 14 0.0029 0.088 13.8 1.3 2 23 368 390 367 390 0.94 7 14 0.094 2.9 9.0 0.4 2 23 399 421 399 421 0.91 8 14 0.05 1.5 9.9 0.8 3 23 662 683 661 683 0.90 9 14 0.00088 0.027 15.4 1.6 1 23 689 711 689 711 0.99 10 14 4.7e-05 0.0014 19.4 1.2 1 23 717 740 717 740 0.97 11 14 2.9e-05 0.0009 20.1 0.5 1 23 746 769 746 769 0.97 12 14 0.98 30 5.8 2.6 2 23 778 799 777 799 0.97 13 14 0.19 5.7 8.1 0.6 2 23 806 828 805 828 0.92 14 14 0.023 0.72 10.9 0.4 2 23 837 859 836 859 0.94
Sequence Information
- Coding Sequence
- ATGTCCTCCGAGGGCGACGAGCAGGAACTGGAGCTATGCCGCGTTTGCGCCAACCCGTTCGAAAGCTGCACCATGTTCCGGCTGTTTGACGATGCGGAACTGGCCGACATCTTCCGGCTGGTGTCCGGCATCGAGGATCGGGATGTCGATTTCAAGCTTCCGGAAAGCTGCTGCCAGGGCTGTAAGCAACGGCTACACGAGGTGGCGGATTTGCGGGACTTGTGCCAGGAGTCGGAtcgaaagctgagaaaaattaTAGACGGAAGTGACGCCGGTACTATTCTTAAGCTGGAAATACTTCAGCTTTCACAGTCGTGCTGGGAAGATAGTGGAATCGTGGCCGGTTCCGATGATGAACAAAACGAAATGGTTCACATTGAGGAGGAATTAGAGGAACTCATTCCAAATGAAACAAAGCCTGAATATATCGATAATGAAAATGCCGAAGAGTCAAACGTATTGCTCAATCTAGAGGATGAAGTAATGTGTATCGAGCCGGATAATGATAACTCAGAACATGAAACCATATTAGAAAAGCCAAAGAGTACAACCAAGAGAAAAGAATCTGTATCGCAACCTAAAAAACGTGGTCGAAAACCAAAGCATCTAGTCTCCGAGCCAAATAACGATGGCTTGAAAAAGACAACTAAGCGCAAGTTGCCCAAAACATATCAATGTGCTTCGTGTGGACGtacttttaaatctttgcacTCTCTGAAGGAACACGAAACAACTCATTCGCCAGAAAAAGCCTGGAAATGCCACATTTGCCCGAAGGAATTCGCCCGACGTGATTACTACAAACGCCATATTAACATGCACGAAACCGAGGGCCAATTCAAATGCAACGAATGTGACAAAGCCTTCCACGCGGACAAGCTACTGCAGGAGCACATTCGCATAAAACACGTCGGAGATCGTCCCTTCAAGTGCAAACTGTGTCCAAACGCGGCCTACGCACGCGCCTCGTCCCTGTACGCCCACGTTAAAATCAATCACGAGAAGAAGCAACCCTTCAAGTGTGACATCTGCTTGCGCACGTTCTACTCCAAAAACTGTCTGGAACGACACAAAAACCGCCACAAAGGCATCAAAACAAGCCAGTGTCCGCACTGTGCGAAGCGTTACGAGTCCAACAACTATCTCCAGCAGCACATTGCCCAACGGCACCCGGAACGGGCGCACGATCTGCCCCAGTGCCAGTACTGTGGCGTTCCGTACAGTGCCGACAGTCACTACCGGAAGCACGTGGCGGCGAAGCATCCGGAGCACTTCGAGGCGTTTGAGCTCTGGTTGAAGGCGAAGCGGAAGATCTTCCTGCAGGTGTCCGGAATCGCCATCCAGGTCGGGGATTCGAAACTTCCGAAAAGTTGCTGCCAACGGTGTCGGGACAGGTTGCAGGAGGTGGAAGATTTGAGGTCGTTGTGTCAGGAATCGGACCAGAAGTTGCGCAAAATGATTGGCATTACGgtgaaggaggaggaggacagTGAGGAGCAAAACGGGAATGATGTGGATGCGATTCCGAAGGTGGAAATGCTGGAACTGGACGAGTCGTACTCTCAGTGGGATGATACGGGGAACCAGCTGGATTCGGATGATAGCCGGAGTGAATCATCGGACGATGAAAAACCTTTGAAATCCAGGAAAGCGAAGAGAGAAAGGTCTGAGAGTAGGACGAAAATGGAGGAAAGAGATTGCTTTTCAGAGGATGACCCGGATGAAGATCCAGATTTTATGGCGAAAAACAGTCCGAAAAAGGTTGGAAGAAAAAGGAGAGAGGAGATTATCAGTGATGAACCTAAAATCCCGAAAAAGCGCGGTCGGAAACCCAAGATTCGAGATCCAGCCTTGGAAGCCCTCCCGAAAGTTTATAAAAAGCGTGGTCCAAAACCCAAAAATCGAGATCCTAACGCGGACCCGGAGGAGGAGAAGGAGcggaaaaagaaagaaaagaaggaAAAGGTTCAGCAGGAATCGCTCTGTTGCATAGTGTGCGGGAAAGTGTACAAATCTCTGTTTGCCCTGCGAGAACACGAAACATCCCACTCGAATGAAAAGCGCTTCAAATGCGAGATTTGCTTGATGGAGTTTGCTCGGCGGAACAATTACAAATTGCACCTGAAACGGCACGAAACGGAGGGACAGTTCAAATGCAACGAATGTGACAAATCATTCTACCTGGAAAAGCTGCTCACCCAGCACATCCAGATACGGCACCGCGGCGAGCGCCCTTTCGCGTGCAAGTTCTGCCCGAAAACGTATCCCCGGGCATCGTCGCTGTTCATGCACGTCCGAACGATCCACGAGGGCATCAAGAAGAAAACGATGAAGTGCGACATTTGCATGCGACAGTTCGTGTGCAAGTACGGCTACGAGCGCCACATGAACAGCCACAAGGGCATCAAGCTGAACCAGTGTCCGCACTGTGGCAACAAGTACGAGTTCAAGGCGTACGTACTGCAGCACATTGCCGAGAAGCATCCGGAAACGGTGCCGAATCTCACCCGGTGTCAGTACTGCGGCGTCGGCTACAGCTCGGACGGATACTATCGAAAGCATATCGTCAAGCGGCATGCGGAGCATTTGCAAGAGTTCGATGTGTGGATGAAGGCAAAGCGCGAGGCGTTGATGTTTCCCGGAAAGCAGGCCATACCGGTCGTTGACGCCGTTGCCAGTGCGGAACCTTCACCGTGTCAGGAAACGGCTGCGTCTTTCCCTGAAAAGAGTAGTATTAATTAA
- Protein Sequence
- MSSEGDEQELELCRVCANPFESCTMFRLFDDAELADIFRLVSGIEDRDVDFKLPESCCQGCKQRLHEVADLRDLCQESDRKLRKIIDGSDAGTILKLEILQLSQSCWEDSGIVAGSDDEQNEMVHIEEELEELIPNETKPEYIDNENAEESNVLLNLEDEVMCIEPDNDNSEHETILEKPKSTTKRKESVSQPKKRGRKPKHLVSEPNNDGLKKTTKRKLPKTYQCASCGRTFKSLHSLKEHETTHSPEKAWKCHICPKEFARRDYYKRHINMHETEGQFKCNECDKAFHADKLLQEHIRIKHVGDRPFKCKLCPNAAYARASSLYAHVKINHEKKQPFKCDICLRTFYSKNCLERHKNRHKGIKTSQCPHCAKRYESNNYLQQHIAQRHPERAHDLPQCQYCGVPYSADSHYRKHVAAKHPEHFEAFELWLKAKRKIFLQVSGIAIQVGDSKLPKSCCQRCRDRLQEVEDLRSLCQESDQKLRKMIGITVKEEEDSEEQNGNDVDAIPKVEMLELDESYSQWDDTGNQLDSDDSRSESSDDEKPLKSRKAKRERSESRTKMEERDCFSEDDPDEDPDFMAKNSPKKVGRKRREEIISDEPKIPKKRGRKPKIRDPALEALPKVYKKRGPKPKNRDPNADPEEEKERKKKEKKEKVQQESLCCIVCGKVYKSLFALREHETSHSNEKRFKCEICLMEFARRNNYKLHLKRHETEGQFKCNECDKSFYLEKLLTQHIQIRHRGERPFACKFCPKTYPRASSLFMHVRTIHEGIKKKTMKCDICMRQFVCKYGYERHMNSHKGIKLNQCPHCGNKYEFKAYVLQHIAEKHPETVPNLTRCQYCGVGYSSDGYYRKHIVKRHAEHLQEFDVWMKAKREALMFPGKQAIPVVDAVASAEPSPCQETAASFPEKSSIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402010;
- 90% Identity
- -
- 80% Identity
- -