Cqui006688.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:122128937-122130410[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0043 0.12 12.6 0.2 3 23 147 167 145 167 0.97 2 9 7e-05 0.002 18.2 0.4 2 23 174 195 174 195 0.97 3 9 0.0011 0.03 14.5 4.2 1 21 201 221 201 223 0.95 4 9 2.2e-05 0.00063 19.8 2.5 1 21 230 250 230 252 0.95 5 9 1.4e-05 0.00041 20.4 0.3 1 23 258 281 258 281 0.96 6 9 0.002 0.058 13.6 0.4 3 23 289 309 287 309 0.96 7 9 3.4e-06 9.6e-05 22.4 3.1 1 23 315 338 315 338 0.97 8 9 0.001 0.029 14.6 1.5 1 23 344 366 344 366 0.98 9 9 1.9e-05 0.00055 20.0 0.7 2 22 373 393 372 393 0.96
Sequence Information
- Coding Sequence
- ATGATGGACTTTTCCAACCGGTGCCGGGGCTGCTTATCGAACGATGAAGAAACCTTGCAACTTCTTGACGACCCCACCGTCCTGCTGTTTGAGGACTGCGTTAGAATCCAGATTTCCTCCGATGAACCAAAACTCCCAAAGCACATCTGCAGCACCTGCTACGGAAAGTGTTCCGCTTGGGCCAAATTTCGCCAGCAGTGCTGGGAAACGAACGAGCTGCTCAGTTTCCGGCTTGGCCACGAGCAGCTCGAAATAATCGGCGCGACGAGCAGCATTGAAAAGGAGGAAGTTCCGGAAACGGTTGAGGAGCCTTCCTTGGTGCGGATTGAAAATGCGGAAGTTGCGGTTGAGGATGGTTGTTCCGACGCGGTTTTCTCGCCCGATGAGCAGGTCTCCTCCGTTGAGGTGTACGAGATTAAGAGTGGTCGCGATATCGCCTGCACTCAATGTCCGATGCAGTTCCGCAGTATGGAGCGATTTGAAGCGCACTGGCGCACTCATCAGGGGTTGAAGGCGGAAGTTTGCAAGATTTGCAACGGTGAATTTAATAACGCTCGGGCGCTGCGTCGTCACATGTTGAAGCACGTGGAGGGGAAAAAGTTCACCTGCCAAGAGTGCGGCAAGAGTTACAAGTTTGCGACCTCGCTGACGCTGCACCGGAAGTGCCATCAGGACGGCCCGCGGCGGTTCGTTTGCGACCTGTGCGGGAAGTCGTTCGTGCGGGCGCACGGGCTGAAGAGTCACATGTCGTGCCACTCGACGGAGATGCCGTTTGAGTGCGGGGAGTGTGGGAAGCGGTTCAAGAACGAGATTATGTTGAGGAATCACGTGACGAGGGTTCACGAAGGGGTGAAACGGTTTGGGTGTTTGAGTTGTGCAAAGAAGTTTAAAACGGCGGCGGAGCTTAAAATTCACGAGAGGTCGCACACAAATTTGAAGCCGTTCAAGTGCAAAGAGTGTGAAAAGAGTTATAAAACCCAGAGTCATCTGGCGGTCCACTTCCGGAACGCGCACACTTCGGAACGACCGTATGAGTGTGAGTTCTGCGGGTTGCGTTTTGGCCATAGCAAGGTGCTTAAAAGCCATCGATTGATCCACACGCAGGAGAAACCTTGGCAGTGCCAGGTTTGTAAGCAGAACTTCCGGCAGCAGGCGACGCTGAAGTCGCACATGCGAACTCGTTGTTCCGCAGGAGTTCAACCGGATAATGGGATGAATGTGGAGGAAGTGAGCAGCGTTGGGGAGGGAAGATCTGGAATAGATTTTGGCGTAATCGAGGTTATAGAATCTTCTCAGTAG
- Protein Sequence
- MMDFSNRCRGCLSNDEETLQLLDDPTVLLFEDCVRIQISSDEPKLPKHICSTCYGKCSAWAKFRQQCWETNELLSFRLGHEQLEIIGATSSIEKEEVPETVEEPSLVRIENAEVAVEDGCSDAVFSPDEQVSSVEVYEIKSGRDIACTQCPMQFRSMERFEAHWRTHQGLKAEVCKICNGEFNNARALRRHMLKHVEGKKFTCQECGKSYKFATSLTLHRKCHQDGPRRFVCDLCGKSFVRAHGLKSHMSCHSTEMPFECGECGKRFKNEIMLRNHVTRVHEGVKRFGCLSCAKKFKTAAELKIHERSHTNLKPFKCKECEKSYKTQSHLAVHFRNAHTSERPYECEFCGLRFGHSKVLKSHRLIHTQEKPWQCQVCKQNFRQQATLKSHMRTRCSAGVQPDNGMNVEEVSSVGEGRSGIDFGVIEVIESSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400908;
- 90% Identity
- iTF_00400908;
- 80% Identity
- -