Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:38445373-38450005[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0098 0.28 11.5 5.2 1 23 173 195 173 195 0.97

2 15 0.00025 0.0071 16.5 0.9 1 23 223 246 223 246 0.90

3 15 4.2e-06 0.00012 22.1 4.3 1 23 252 274 252 274 0.98

4 15 1.7e-05 0.00048 20.2 3.3 1 23 280 302 280 302 0.96

5 15 0.0023 0.066 13.4 0.4 1 19 308 326 308 329 0.94

6 15 0.00043 0.012 15.7 1.5 1 21 335 355 335 357 0.95

7 15 3e-07 8.7e-06 25.7 1.0 1 23 366 388 366 388 0.99

8 15 4.1e-06 0.00012 22.1 0.5 1 23 394 416 394 416 0.98

9 15 0.00032 0.009 16.2 1.5 1 21 423 443 423 444 0.94

10 15 0.00019 0.0054 16.9 1.0 1 23 549 571 549 571 0.98

11 15 5.1e-07 1.4e-05 25.0 1.9 1 23 589 611 589 611 0.98

12 15 0.0058 0.17 12.2 0.4 1 23 618 640 618 640 0.97

13 15 9.3e-05 0.0027 17.8 3.2 1 23 648 670 648 670 0.98

14 15 1.7e-06 4.9e-05 23.3 0.3 1 23 676 698 676 698 0.98

15 15 0.25 7 7.1 0.0 3 23 707 727 705 727 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0098	0.28	11.5	5.2	1	23	173	195	173	195	0.97
2	15	0.00025	0.0071	16.5	0.9	1	23	223	246	223	246	0.90
3	15	4.2e-06	0.00012	22.1	4.3	1	23	252	274	252	274	0.98
4	15	1.7e-05	0.00048	20.2	3.3	1	23	280	302	280	302	0.96
5	15	0.0023	0.066	13.4	0.4	1	19	308	326	308	329	0.94
6	15	0.00043	0.012	15.7	1.5	1	21	335	355	335	357	0.95
7	15	3e-07	8.7e-06	25.7	1.0	1	23	366	388	366	388	0.99
8	15	4.1e-06	0.00012	22.1	0.5	1	23	394	416	394	416	0.98
9	15	0.00032	0.009	16.2	1.5	1	21	423	443	423	444	0.94
10	15	0.00019	0.0054	16.9	1.0	1	23	549	571	549	571	0.98
11	15	5.1e-07	1.4e-05	25.0	1.9	1	23	589	611	589	611	0.98
12	15	0.0058	0.17	12.2	0.4	1	23	618	640	618	640	0.97
13	15	9.3e-05	0.0027	17.8	3.2	1	23	648	670	648	670	0.98
14	15	1.7e-06	4.9e-05	23.3	0.3	1	23	676	698	676	698	0.98
15	15	0.25	7	7.1	0.0	3	23	707	727	705	727	0.97

Sequence Information

Coding Sequence: ATGGCAGAAGATTTATCGATCAATAAAAATAAGATCTGTGCTTCGCGGTACCACAACAACGACATCTGTCGTCTGTGCTTGAAGAATGAGGCCCATATGGAGCCGCTTTTTTACGAGAATCTATTTCCGAACATTCTGCTCACCAAGAAGATTTACGACTGCACGTCGATACAGATAATTTACGAGCGCAACCTGCCAATGTTCGTGTGCAAACTGTGCGCCAACAAGCTGGACGAGTACATGAGATTCCGAGAACGGTGCGTAGCCAACGATGAGTTTCTGCGGAACGCGCTGGCATTCTTCGACGCTGGCCAGAACAGCATCAAGCTGGAACAGCAACACCACGAAGAAATTAAGCAGGAACACTCCAGCCATGGACATTCGATTCAGCAGACGCAGCAATACTCAGTTGCAACGGCTCCGATTGACTTTCGCCAGATTAAACGTTCGCCGGAACgggtcgacgacgacgaggaagaGCCCCTTGAAGACGAGCCCGAGGAAGACGACAAAACGTACTCGTGCACGGTCTGCTCGAAATCGTTCAAGATTCGGCAGCATTTGCTGATTCACAGCCATACCCACGTGGAGCTTCTACAACCACAGCAGCAACAGCCGCAGCAATTGCGTCAGGAACCAGTGACGACACCGGAGGGCAAGCCCACATACAGCTGTGGCAAGTGCACCAAGGTGTTCATCAACCGGGGCAATCTGCTGAACCATGCCGCAGAGTGCCACGGCCAGGTGAAGAACTTTTGCTGTCAGATTTGCAACAAATCTTTCAAATACAATGTACAACTTCGAATTCACCTTCGCACACACTCCGGAGAGCGGCCTCACGCGTGCGAGATATGCCATCGTGGGTTTTCCCAACTTTCAAACCTAAGGTCGCACCGTAAGGTCCACTCCAAGGTCAAACCGTACAAGTGTCAGCTGTGCTTGAAAAGCTTCACCATGCTGGACAGCCTGACCGCGCACAGCCTAAAGTGCGTCAAGGACAAGTACCGGTGCCAACTGTGCTCGAAGTCGTTCGCCAAAGAGGGCAACCTGATCGCGCATCTGCAGTGCCATAGTGAGGGGGTCATCGAGAAGAACTTCAAGTGTGAAATGTGCCCCAAAAGCTTTCGTAACAAGGAAGACTGGAAACGGCACGTACGCGTCCACACGGGTGAAAAACCCTACATCTGCGATCTGTGCAACAAAGGTTTCGCGCAGAAAGCCAACCTGCTGTCCCACCGCAAGACTCACCTCAAGCCGGAAGTCATCTTCAAGTGCGAACGCTGCGGCAAGGTGTGTCGCACGCAGAAACTGCTCGAACTGCACGTGCAAAAGTGTGGCCTGCTCGAACTGCCCGGCACTCCGGTCCCCTCCGTGCCACCGACGCCGTCTTCGATGGGCTCGCCACCACCGCTGGGAGAagcggcagcagcagcgccGGCCACACCCACGCTCGAGACGCTGTCCGACCTGCTGCGGTACGAGTTTGCCATGCGGGCACCCATCGAGCTGCAGGATCTCCTGATGGCCACGATGGAGAAGAAGCGGGCGgcggatgctgctgctgcggcgatTGTCTCGACGCCAGCGGTTGTTGCAGCACCGAACCCGGCACCGCCCGCCACTGCTGGTGGTGCTCGTCACACGTATCGGTGCGAAATTTGCTTCAAAGCGTACTCGCAGTACCCGAGCCTGGTTAAGCACCGGAAGCTGCATCTGAAGACGCCCCGGGCGAGGACCAAGTCCACCGAGGCGGACGATCGGCCGTACTATTGTGATATCTGCGGGAAGAACTTCAAGTTCAACCGGAATCTGAAGGTCCACATGAAGCTGCACACCAAATCGAACGGGTTCTACAAGTGCGACAAGTGCAGCGGGACGTTCGAAACGGGCGAACTGCTGAAGACGCACCTGCTGGAGCATCCGATCGACGTCGAGAAGATCTTCAACTGCGAGTTCTGCTCGAACACGTTCAAATCGAACGAGGACCTGAAGCGGCACCGAAGGTCCCACACTGGGGAACGTCCGTTCAAGTGTGAGGCGTGTCCGAAGGCTTTCACGCAGCTGTCGAATCTGCGCGCCCACACCAAGATTCACGAGAAGAAGCGGCCGGCGTACGGGTGCAACATTTGCCTGCTGGAGCTGGACTCACTGGAGGCGCTGAACGTGCACCTGAAGACGCATCAGTTTCAGCTGTTTGAGCTGTGCAAGGACATGAAGTAG
Protein Sequence: MAEDLSINKNKICASRYHNNDICRLCLKNEAHMEPLFYENLFPNILLTKKIYDCTSIQIIYERNLPMFVCKLCANKLDEYMRFRERCVANDEFLRNALAFFDAGQNSIKLEQQHHEEIKQEHSSHGHSIQQTQQYSVATAPIDFRQIKRSPERVDDDEEEPLEDEPEEDDKTYSCTVCSKSFKIRQHLLIHSHTHVELLQPQQQQPQQLRQEPVTTPEGKPTYSCGKCTKVFINRGNLLNHAAECHGQVKNFCCQICNKSFKYNVQLRIHLRTHSGERPHACEICHRGFSQLSNLRSHRKVHSKVKPYKCQLCLKSFTMLDSLTAHSLKCVKDKYRCQLCSKSFAKEGNLIAHLQCHSEGVIEKNFKCEMCPKSFRNKEDWKRHVRVHTGEKPYICDLCNKGFAQKANLLSHRKTHLKPEVIFKCERCGKVCRTQKLLELHVQKCGLLELPGTPVPSVPPTPSSMGSPPPLGEAAAAAPATPTLETLSDLLRYEFAMRAPIELQDLLMATMEKKRAADAAAAAIVSTPAVVAAPNPAPPATAGGARHTYRCEICFKAYSQYPSLVKHRKLHLKTPRARTKSTEADDRPYYCDICGKNFKFNRNLKVHMKLHTKSNGFYKCDKCSGTFETGELLKTHLLEHPIDVEKIFNCEFCSNTFKSNEDLKRHRRSHTGERPFKCEACPKAFTQLSNLRAHTKIHEKKRPAYGCNICLLELDSLEALNVHLKTHQFQLFELCKDMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400811;
90% Identity: iTF_00400811;
80% Identity: -