Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:215494162-215600834[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00016 0.0046 17.1 0.9 1 21 187 207 187 208 0.95

2 17 3.7 1.1e+02 3.4 0.4 2 14 244 256 244 259 0.87

3 17 1.3e-05 0.00038 20.5 3.8 1 23 451 474 451 474 0.96

4 17 6.1e-06 0.00017 21.6 0.4 2 23 481 502 480 502 0.98

5 17 2.7e-05 0.00078 19.5 0.1 1 23 508 530 508 530 0.98

6 17 6e-05 0.0017 18.4 0.7 2 23 537 558 536 558 0.96

7 17 3.4e-07 9.8e-06 25.5 4.1 1 23 564 586 564 586 0.99

8 17 3.7e-06 0.00011 22.2 0.3 1 23 650 672 650 672 0.98

9 17 1.2e-05 0.00034 20.7 2.5 2 23 679 700 678 700 0.98

10 17 1.3e-05 0.00037 20.5 0.7 1 23 706 728 706 728 0.98

11 17 4e-05 0.0011 19.0 0.1 2 23 734 755 733 755 0.97

12 17 1.4e-06 3.9e-05 23.6 1.7 1 23 761 783 761 783 0.99

13 17 4.2e-06 0.00012 22.1 1.3 2 23 832 853 831 853 0.98

14 17 3.1e-06 8.7e-05 22.5 1.2 1 23 859 881 859 881 0.99

15 17 9.1e-05 0.0026 17.9 0.0 1 23 887 912 887 912 0.98

16 17 4.8e-05 0.0014 18.7 0.2 2 23 918 939 917 939 0.97

17 17 2.2e-05 0.00064 19.8 2.2 1 23 945 967 945 967 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00016	0.0046	17.1	0.9	1	21	187	207	187	208	0.95
2	17	3.7	1.1e+02	3.4	0.4	2	14	244	256	244	259	0.87
3	17	1.3e-05	0.00038	20.5	3.8	1	23	451	474	451	474	0.96
4	17	6.1e-06	0.00017	21.6	0.4	2	23	481	502	480	502	0.98
5	17	2.7e-05	0.00078	19.5	0.1	1	23	508	530	508	530	0.98
6	17	6e-05	0.0017	18.4	0.7	2	23	537	558	536	558	0.96
7	17	3.4e-07	9.8e-06	25.5	4.1	1	23	564	586	564	586	0.99
8	17	3.7e-06	0.00011	22.2	0.3	1	23	650	672	650	672	0.98
9	17	1.2e-05	0.00034	20.7	2.5	2	23	679	700	678	700	0.98
10	17	1.3e-05	0.00037	20.5	0.7	1	23	706	728	706	728	0.98
11	17	4e-05	0.0011	19.0	0.1	2	23	734	755	733	755	0.97
12	17	1.4e-06	3.9e-05	23.6	1.7	1	23	761	783	761	783	0.99
13	17	4.2e-06	0.00012	22.1	1.3	2	23	832	853	831	853	0.98
14	17	3.1e-06	8.7e-05	22.5	1.2	1	23	859	881	859	881	0.99
15	17	9.1e-05	0.0026	17.9	0.0	1	23	887	912	887	912	0.98
16	17	4.8e-05	0.0014	18.7	0.2	2	23	918	939	917	939	0.97
17	17	2.2e-05	0.00064	19.8	2.2	1	23	945	967	945	967	0.98

Sequence Information

Coding Sequence: ATGAAGGAAAACCCGATGATTGACGTGTTTGACGTGTCGTCGGACTTTAACCCGGACATGATCCTGTCGAACGTGTTCCTCGATCCGTCGCTGGACTTTATGACCAGCATCGACGACGCGGACATCATGGCGCAGGATTTTCTGCACTTTGCCACCGCTAGCGGGAGTGGAAGTGCAATGTTTTATCCTGCGGAACAGCAACATCAACAGCAACAGCCGCAGGTGGAGCAACAGCAAATGCAGCAACAAATTCAAATGCCTCAACAGCAGCAGATGCaattgcagcagcagcaacaacagttTGCGATTATTCCGCCGCAAAAGTGTGTTGTGGAACAGcaaaaatcCGGTGAAGGACGATACGAGCTCCCGGTGGCCGGTGGAAGCAGTAGCGATTATGCAAAACAAGCGGTTGTGCCCCAGGTGGCCAACGTGGCCGCGTCCCCAGTGGAACCGGTCAAGCCCCAACCTCCAGCGGTTCAGCAACAGACCTGCAAGTGCGAGTTCTGCGAGTATCTCCAGGCGAACCGGATCAGTCTGGGCGGCGTGGACCACGTGTTCCAGTGCGAGTTCTGCGGCGAGGGGTTTGCCAGTCAGGGAAACTTTAACCGGCATCGCTGTGGGAGTACGGACATCCAGGTCTACCGGTGTGAAGTTTGTAGAAGGGAGTACGGAACGTCGCGGACGGAACCCAGTGTTGGAGTGGGGTTGTTGGAGGGAGCCCGGGCAAAATGTGATATCTGCAATCGAAACTATGTGcaatcgacgacgacgacgacgagttcgACGACCCTGTACGGGCAGGTCGGACGACCTGCGCTGGCGGAGGCCAACAGCTATGCCAAGATGACGACCTCCGAAAGTCCCATGGAGAGAAGTGACCTCGGCGGTATTGAAGAACCGTTCGGAGCGGACAGTGAGTGTATCAGTGAACTGTTGACGGAGGGGACTCCGGTCGTGGAACCCCTTCCAAAGACCTTTTACGTGCTTGCAAACTCGGAAATGAATGCCGGTTCCTACCTCCAGAATGCCAAAATCAGCAGCGAATCCGGCGTGACCAGCCTGCACCAGTACGACCAGTACGAGGACGAGGACTACTCGTCGATGTCTGAAGATGAAGCTATTGTTCCAATAGAACCCTATGCCAAATCGCCCAACCAGGAGCAAGCCAAAACCGAGCTGCCAATCCAGGAGACCCTGGTGGACACCAGCAGCAACGCGGTCATCCCAACCTTCCCATCGTTCAACTCCGCGGAGACCATCCCGGCAATGTCCACCAACCTAACCGAGGAAGAGGAGTGCGACTCGTCCAGCAAGGAACCCTCCTCCGGCGTGACCCCGGACCGCCCCTTCAAGTGTCACATCTGTGAGCGGTCGTACCGAAATCACAAGAACCTGAAGGCGCACATTAAAGGGGCGCACGAAGGCATCCGGGCGAATCAGTGCGAGATCTGTGGGAAGAACTTTAGCGGGAGCAGTTATCTGGTGATTCACCGGCGGAGGCACACCGGCGAGAGGCCGTTCAAGTGCGGAACCTGTGGGAAGGCTTTCGTGGACAGCCGGGCGCTGTCGGTGCACGCGAGGTTGCACACGCCGGGGAATCGGTTGAAGTGTATGAAATGCGAAAAGACCTTCTCGAGCGCATCTGCCCTAACGGTCCACAACCGATTACACACCGGCGTTCACCCGTACAAATGTGAAATCTGCGACAAAACCTTCCCGCAGTACAACAACCTGAAGCACCACATGAAGAAGCACGAGGCCACAACGACCACCACGAGCGTCGTCCCAACCGCGTCGGAAAGCTCCCGAACGTCCACCACCCTGGAATCGATCGCCAGCccgagcagcagcaacagcagcacgaGCAGCAACCTCTCGTCAACGAGTAGCAGTAGCAGTGGGATCAGTTCCGGGTCGACGTCATCTTCGACGACAACGCTGGACTACAAGTGTAATGTTTGTGGTAAAACGTTTGGGAGTTCGGAAGATCTGCAGGGTCATCTGAACCAGCACTGCAAAGATCGACCAAATCAGTGCGAGTTCTGTTCGAAGGTGTTTCCGCGGTCGTCCCACTTGATAATTCACCGGAGGAGACATACAGgtgaaCGACCCTTCAAGTGCAAATACTGCGAGAAGGCGTTTGTGGATTCGAGGGCACTTTCCGTTCACACCAGACTTCACACCGGAGAGAGGGTCACGTGCGACATCTGTCTGAAGACGTTCGCCAGCAGTAGCGGGTTGATCGTGCACCGCCGGATCCACCTGGGAATTCACCCGTACAAGTGTGACTACTGTCCAAAGTCGTTCGCCCAGTCGACTGCCTTGAAGTACCACCTGAAGAAGCACGACACGGCGAACCTTCCGACAACCACGAACGACGAGTCCAAGCACAGCGATTCGAGTCAGCACTCGGAGCAGTCGGATCAGCTGGAGACggcagcgacgacgacgactgaaATTGACCAACAAGCCAAGACGGGCGGCCAGGTCAAGTGCCAAGTGTGCAACAAGTTCTTCCGCTCGGCCGAGTACCTGGCACGGCATCGGCGGACCCACTCCGGTGAGCGACCGTTCCAGTGCGAACTTTGCGGTAAGAATTTCAGCACCATGAGCTACCTGGTCATCCACCGGCGCCGGCACACCTCGGAACGTCCCTACAAGTGCCCGGCCGGCGGCTGTCCAAAGGCGTTCGTCGACAGCCGGGCCCTGCAGGAGCACAGCCGCTCGGTGCACGCCAAAATCCGTGTACCGTGCGAAACCTGCTCCAAAACGTACTCCAGCGTTAGCAACCTGATTGTCCACCGGCGAATCCACAGCGGAGTTCACCCCTTCGAGTGTGTCCACTGTGGGAGGTCATTCGCGCAGAAGAATGCTCTCAAATACCACCTAAAACAGCACGGTGATGACCGTAAAGAGTCCCCAGAAGTGGGATCTTCCTAA
Protein Sequence: MKENPMIDVFDVSSDFNPDMILSNVFLDPSLDFMTSIDDADIMAQDFLHFATASGSGSAMFYPAEQQHQQQQPQVEQQQMQQQIQMPQQQQMQLQQQQQQFAIIPPQKCVVEQQKSGEGRYELPVAGGSSSDYAKQAVVPQVANVAASPVEPVKPQPPAVQQQTCKCEFCEYLQANRISLGGVDHVFQCEFCGEGFASQGNFNRHRCGSTDIQVYRCEVCRREYGTSRTEPSVGVGLLEGARAKCDICNRNYVQSTTTTTSSTTLYGQVGRPALAEANSYAKMTTSESPMERSDLGGIEEPFGADSECISELLTEGTPVVEPLPKTFYVLANSEMNAGSYLQNAKISSESGVTSLHQYDQYEDEDYSSMSEDEAIVPIEPYAKSPNQEQAKTELPIQETLVDTSSNAVIPTFPSFNSAETIPAMSTNLTEEEECDSSSKEPSSGVTPDRPFKCHICERSYRNHKNLKAHIKGAHEGIRANQCEICGKNFSGSSYLVIHRRRHTGERPFKCGTCGKAFVDSRALSVHARLHTPGNRLKCMKCEKTFSSASALTVHNRLHTGVHPYKCEICDKTFPQYNNLKHHMKKHEATTTTTSVVPTASESSRTSTTLESIASPSSSNSSTSSNLSSTSSSSSGISSGSTSSSTTTLDYKCNVCGKTFGSSEDLQGHLNQHCKDRPNQCEFCSKVFPRSSHLIIHRRRHTGERPFKCKYCEKAFVDSRALSVHTRLHTGERVTCDICLKTFASSSGLIVHRRIHLGIHPYKCDYCPKSFAQSTALKYHLKKHDTANLPTTTNDESKHSDSSQHSEQSDQLETAATTTTEIDQQAKTGGQVKCQVCNKFFRSAEYLARHRRTHSGERPFQCELCGKNFSTMSYLVIHRRRHTSERPYKCPAGGCPKAFVDSRALQEHSRSVHAKIRVPCETCSKTYSSVSNLIVHRRIHSGVHPFECVHCGRSFAQKNALKYHLKQHGDDRKESPEVGSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400798;
90% Identity: iTF_00400798;
80% Identity: -