Cpip005219.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:9789310-9860141[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00026 0.0081 17.1 0.9 1 21 187 207 187 208 0.95 2 17 6 1.8e+02 3.4 0.4 2 14 244 256 244 259 0.87 3 17 2.2e-05 0.00067 20.5 3.8 1 23 451 474 451 474 0.96 4 17 1e-05 0.00031 21.6 0.4 2 23 481 502 480 502 0.98 5 17 4.4e-05 0.0014 19.5 0.1 1 23 508 530 508 530 0.98 6 17 9.8e-05 0.003 18.4 0.7 2 23 537 558 536 558 0.96 7 17 5.6e-07 1.7e-05 25.5 4.1 1 23 564 586 564 586 0.99 8 17 6e-06 0.00018 22.2 0.3 1 23 650 672 650 672 0.98 9 17 1.9e-05 0.00059 20.7 2.5 2 23 679 700 678 700 0.98 10 17 2.1e-05 0.00064 20.5 0.7 1 23 706 728 706 728 0.98 11 17 6.6e-05 0.002 19.0 0.1 2 23 734 755 733 755 0.97 12 17 2.2e-06 6.9e-05 23.6 1.7 1 23 761 783 761 783 0.99 13 17 6.9e-06 0.00021 22.1 1.3 2 23 834 855 833 855 0.98 14 17 5e-06 0.00015 22.5 1.2 1 23 861 883 861 883 0.99 15 17 0.00015 0.0045 17.9 0.0 1 23 889 914 889 914 0.98 16 17 7.8e-05 0.0024 18.7 0.2 2 23 920 941 919 941 0.97 17 17 3.7e-05 0.0011 19.8 2.2 1 23 947 969 947 969 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAAAACCCGATGATTGACGTGTTTGACGTGTCGTCGGACTTTAACCCGGACATGATCCTGTCGAACGTGTTCCTCGATCCGTCGCTGGACTTTATGACCAGCATCGACGACGCGGACATCATGGCGCAGGATTTTCTGCACTTTGCCACCGCTAGCGGGAGTGGAAGTGCAATGTTTTATCCTGCGGAACAGCAACATCAACAGCAACAGCCGCAGGTGGAGCAACAGCAAATGCAGCAACAAATTCAAATGCCTCAACAGCAGCAGATGCaattgcagcagcagcaacaacagttTGCGATTATTCCGCCGCAAAAGTGTGTTGTGGAACAGcaaaaatcCGGTGAAGGACGATACGAGCTCTCGGTGGCCGGTGGAAGCAGTAGCGATTATGCAAAACAAGCGGTTGTGCCCCAGGTGGCCAACGTGGCCGCGTCCCCAGTGGAACCGGTCAAGCCCCAACCTCCAGCGGTTCAGCAGCAGACCTGCAAGTGCGAGTTCTGCGAGTATCTCCAGGCGAACCGGATCAGTCTGGGCGGCGTGGACCACGTGTTCCAGTGCGAGTTCTGCGGCGAGGGGTTTGCCAGTCAGGGAAACTTTAACCGGCATCGCTGTGGGAGTACGGACATCCAGGTCTACCGGTGTGAAGTTTGTAGAAGGGAGTACGGAACGTCGCGGACGGAACCCAGTGTTGGAGTGGGGTTGTTGGAGGGAGCCCGGGCAAAATGTGATATCTGCAATCGAAACTATGTgcaatcgacgacgacgacgacgagttcgACGACCCTTTACGGGCAGGTCGGACGACCTGCGCTGGCGGAGGCCAACAGCTATGCCAAGATGACGACCTCCGAAAGTCCCATGGAGAGAAGTGATCTCGGCGGTATTGAAGAACCGTTCGGAGCGGACAGTGAGTGTATCAGTGAACTGTTGACGGAGGGGACTCCGGTCGTGGAACCCCTTCCAAAGACCTTCTACGTGCTTGCAAACTCGGAAATGAATGCCGGTTCCTACCTCCAGAATGCCAAAATCAGCAGCGAATCCGGCGTGACCAGCCTGCACCAGTACGACCAGTACGAGGACGAGGACTACTCGTCGATGTCTGAAGATGAAGCTATTGTTCCAATAGAACCCTATGCCAAATCGCCCAACCAGGAGCAAGCCAAAACCGAGCTGCCAATCCAGGAGACCCTGGTGGACACCAGCAGCAACGCGGTCATCCCAACCTTCCCATCGTTCAACTCCGCGGAGACCATCCCGGCAATGTCCACCAACCTAACCGAGGAAGAGGAGTGCGACTCGTCCAGCAAGGAACCCTCCTCCGGCGTGACCCCGGACCGCCCCTTCAAGTGTCACATCTGTGAGCGGTCATACCGAAATCACAAGAACCTGAAGGCGCACATCAAGGGGGCGCACGAAGGCATCCGGGCGAATCAGTGCGAGATCTGTGGGAAGAACTTTAGCGGGAGCAGTTATCTGGTGATTCACCGGCGGAGGCACACCGGCGAGAGGCCGTTCAAGTGCGGGACCTGCGGGAAGGCGTTCGTGGACAGCCGGGCGCTGTCGGTGCACGCGAGGTTGCACACACCGGGGAATCGGTTGAAGTGTATGAAATGCGAAAAGACCTTCTCGAGCGCATCTGCCCTAACGGTCCACAACCGATTACACACCGGCGTTCACCCGTACAAATGTGAAATCTgCGACAAAACCTTCCCGCAGTACAACAACCTCAAGCACCACATGAAAAAGCACGAGGCCACAACGACCACCACGAGCGTCGTCCCAACCGCATCAGAAAGCTCCCGCACGTCCACCACCCTGGAATCGATCGCTAGCccgagcagcagcaacagcagcacgaGCAGCAACCTCTCGTCAACGAGTAGCAGTAGCAGTGGGATCAGTTCCGGGTCGACGTCGTCTTCGACGACAACGCTGGACTACAAGTGTAATGTTTGTGGTAAAACGTTTGGGAGTTCGGAAGATCTCCAGGGTCATCTGAACCAGCACTGCAAGGATCGACCAAATCAGTGCGAGTTCTGTTCGAAGGTGTTTCCGCGGTCGTCCCACTTGATAATTCACCGGAGGAGACATACAGGTGAACGACCCTTCAAGTGCAAATACTGCGAGAAGGCGTTTGTGGATTCGAGGGCACTTTCCGTTCACACCAGACTTCACACCGGAGAGAGGGTCACGTGCGACATCTGTCTGAAGACGTTCGCCAGCAGTAGCGGGTTGATCGTGCACCGCCGGATCCACCTGGGAATTCACCCGTACAAGTGTGACTACTGTCCAAAGTCGTTCGCCCAGTCTACGGCCTTGAAGTACCACCTGAAGAAGCACGACACGGCGAACCTTCCGACGACCACGAACGACGAGTCCAAGCACAGCGATTCGAGTCAGCACTCGGAGCAGTCGGATCAGCTGGAGACGGCAGCGACGACGACCACGTCGACTGAAATTGACCAACAAGCCAAGACGGGCGGCCAGGTCAAGTGCCAAGTGTGCAACAAGTTCTTCCGCTCGGCCGAGTACCTGGCACGGCATCGGCGGACCCACTCCGGTGAGCGACCGTTCCAGTGCGAACTTTGCGGTAAGAATTTCAGCACCATGAGCTACCTGGTCATCCACCGGCGCCGGCACACCTCGGAACGTCCCTACAAGTGCCCGGCCGGCGGCTGTCCAAAGGCGTTCGTCGACAGCCGGGCCCTGCAGGAGCACAGCCGCTCGGTGCACGCCAAGATTCGTGTACCGTGCGAAACCTGCTCCAAAACGTACTCGAGCGTTAGCAACCTGATTGTCCACCGGCGAATCCACAGCGGAGTTCACCCCTTCGAGTGTGTCCACTGTGGGAGGTCATTCGCGCAGAAGAATGCTCTCAAATACCACCTAAAACAGCACGGTGATGATCGTAAAGAGTCCCCAGAAGTGGGATCTTCCTAA
- Protein Sequence
- MKENPMIDVFDVSSDFNPDMILSNVFLDPSLDFMTSIDDADIMAQDFLHFATASGSGSAMFYPAEQQHQQQQPQVEQQQMQQQIQMPQQQQMQLQQQQQQFAIIPPQKCVVEQQKSGEGRYELSVAGGSSSDYAKQAVVPQVANVAASPVEPVKPQPPAVQQQTCKCEFCEYLQANRISLGGVDHVFQCEFCGEGFASQGNFNRHRCGSTDIQVYRCEVCRREYGTSRTEPSVGVGLLEGARAKCDICNRNYVQSTTTTTSSTTLYGQVGRPALAEANSYAKMTTSESPMERSDLGGIEEPFGADSECISELLTEGTPVVEPLPKTFYVLANSEMNAGSYLQNAKISSESGVTSLHQYDQYEDEDYSSMSEDEAIVPIEPYAKSPNQEQAKTELPIQETLVDTSSNAVIPTFPSFNSAETIPAMSTNLTEEEECDSSSKEPSSGVTPDRPFKCHICERSYRNHKNLKAHIKGAHEGIRANQCEICGKNFSGSSYLVIHRRRHTGERPFKCGTCGKAFVDSRALSVHARLHTPGNRLKCMKCEKTFSSASALTVHNRLHTGVHPYKCEICDKTFPQYNNLKHHMKKHEATTTTTSVVPTASESSRTSTTLESIASPSSSNSSTSSNLSSTSSSSSGISSGSTSSSTTTLDYKCNVCGKTFGSSEDLQGHLNQHCKDRPNQCEFCSKVFPRSSHLIIHRRRHTGERPFKCKYCEKAFVDSRALSVHTRLHTGERVTCDICLKTFASSSGLIVHRRIHLGIHPYKCDYCPKSFAQSTALKYHLKKHDTANLPTTTNDESKHSDSSQHSEQSDQLETAATTTTSTEIDQQAKTGGQVKCQVCNKFFRSAEYLARHRRTHSGERPFQCELCGKNFSTMSYLVIHRRRHTSERPYKCPAGGCPKAFVDSRALQEHSRSVHAKIRVPCETCSKTYSSVSNLIVHRRIHSGVHPFECVHCGRSFAQKNALKYHLKQHGDDRKESPEVGSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00401906;
- 90% Identity
- iTF_00401906;
- 80% Identity
- -