Cqui010117.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- Mbd3
- Assembly
- GCA_015732765.1
- Location
- NC:23255253-23257177[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-25 5.2e-22 77.0 0.0 1 71 5 70 5 76 0.92 2 2 8.5e-05 0.25 10.7 0.0 24 74 108 181 103 184 0.85
Sequence Information
- Coding Sequence
- ATGAACGTTTCCATCGAGCGTAAACGCACGGACTGTGCGGCCCTGCCGAAAGGTTGGCAGCGGGAGGAGGTTCTCCGGAAAAGTGGACTGTCCGCGGGAAAGGTCGATGTTTACTATTACAGCCCAACCGGTAAGAAAATAGAAAGCAAACCCCAGCTGGCCCGCGTCCTCGGGGACACGATCGATCTGTCCACGTTCGACTACCAGGCGGGTCGCGTCGCGACGCACCTGATGCACAATGCCCTGAAGCGCAAGCTGGCCGGGTCCGGGTCCGGAAGTCCGACGCTTCCGCCGCCGGTTCCCATCTACAGCCAGCTGAGTTCGGGGTCGTCGGCGAGGCCGCACCAGGCGCAGCAACCGGACTACAGTCGCGGAATGCGCGCCGATACGTCCCTCATTCCACCGATTCGTCAGACGGCGTCCATATTTAAGCAGCCGGTAACGGTTGTGCGGTCCCAGGACGGCGAGGGCAAGGTTAAGCGAGATCTGCAGCACGGCACACAGGTTAAGCCCAAACAGCTGTTCTGGGAGAAGCGGTTGGAGAATCTGCGCGCCAACAACGTGTACAACGAGGAGATCGGTTCGCTCGAGCTTCCCAAGCGACTCAAATCCGTCGGTCCCGGCGTGAACGAGGCCACCGTCCTGCAGTCCCTCGCGACAGCCCTGCACCACAACACCCACCCGGTGACGGGACAAACCGCGTCCAAAACTTCACTCAACACGAACGCGGGGGTTTTTCTGAACCCGGACCAGCCGCTGATGCACGTGGCCACCGTCACCGAGGACGACATCAAGCGGCAGGAGGAGCGCGTCCAGTACGCCCGGCTGCGACTCCAGGAGGCGCTGCGGACGTAG
- Protein Sequence
- MNVSIERKRTDCAALPKGWQREEVLRKSGLSAGKVDVYYYSPTGKKIESKPQLARVLGDTIDLSTFDYQAGRVATHLMHNALKRKLAGSGSGSPTLPPPVPIYSQLSSGSSARPHQAQQPDYSRGMRADTSLIPPIRQTASIFKQPVTVVRSQDGEGKVKRDLQHGTQVKPKQLFWEKRLENLRANNVYNEEIGSLELPKRLKSVGPGVNEATVLQSLATALHHNTHPVTGQTASKTSLNTNAGVFLNPDQPLMHVATVTEDDIKRQEERVQYARLRLQEALRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00948753;
- 90% Identity
- iTF_00400567;
- 80% Identity
- iTF_00400567;