Cqui000278.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:6406217-6407034[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-12 7e-10 38.2 0.0 2 42 19 58 18 60 0.93 2 2 0.17 1.1e+02 2.4 0.0 27 39 144 156 144 160 0.88
Sequence Information
- Coding Sequence
- atgcCACGAACGTACAAACGGGCGGAAAATGCCCGAGGCTATCAAAAGTACGGCGAAGCGGCACTGCAGAAATGTCTGAAGGCAATCCAGAACGGGATGACCCACCGGAAGGCGTCGGAGATGTATGGCATCCCGCGAACCACAATCACCAACCGACTTCAGGGGAAAACCGGTGAAAAGGTCGGTGGACGGCGTGCGTTTACCGACGAGGAGGAACAGCTGTTTGTGGACTGTCTGGTCGTGATGCGAGATTCGGGACTGGCGGTCAACGAACACGATCTGCGCTTCGTGGTGAAAAGTTACCTCACGGAGGTGGGCAAAACGGTGCCCCGGTTTGCGGACAATAAGCCGGGGCCGGATTGGACCAAGTTGTTTCTCGGGCGGCACCCGGAGCTGGCCTTTTTGGAAACAAACAGGAAAGGCAAGGGAAACATCCCGGAGGAAACGCTGAGCGCCTGTGTCAGAGAGCTGATCGAGTCGGCGGATATTCCAGGGGTGGAGATTGCGATTTCCGACGTGCCGGAAATTATGCAGCACTTTTTGgacgtttag
- Protein Sequence
- MPRTYKRAENARGYQKYGEAALQKCLKAIQNGMTHRKASEMYGIPRTTITNRLQGKTGEKVGGRRAFTDEEEQLFVDCLVVMRDSGLAVNEHDLRFVVKSYLTEVGKTVPRFADNKPGPDWTKLFLGRHPELAFLETNRKGKGNIPEETLSACVRELIESADIPGVEIAISDVPEIMQHFLDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400487;
- 90% Identity
- iTF_00400487;
- 80% Identity
- -