Cpip004542.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:133492929-133493783[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-12 1.2e-09 38.2 0.0 2 42 19 58 18 60 0.93 2 2 0.28 1.8e+02 2.5 0.0 27 40 144 157 144 161 0.81
Sequence Information
- Coding Sequence
- atgcCACGAACGTACAAACGGGCGGAAAATGCCCGAGGCTATCAAAAGTACGGCGAAGCGGCGCTGCAGAAATGTCTGAAGGCAATCCAGAACGGGATGACCCACCGGAAGGCGTCGGAGATGTATGGCATCCCGCGGACCACAATCACCAACAGACTCCAGGGGAAAACCGGTGAAAAGGTCGGTGGGCGGCGTGCGTTTACCGACGAGGAGGAACAGCTGTTTGTGGACTGTCTGGTCGTGATGCGAGATTCGGGACTTGCGGTCAACGAACACGATCTGCGCTTCGTGGTGAAGAGTTACCTCACGGAGGTGGGCAAAACGGTGCCCCGGTTTGCGGACAACAAGCCGGGGCCGGATTGGACCAAGTTGTTTCTCGGGCGGCACCCGGAGCTGGCCTTTTTGGAAACTAACAGGAAAGGAAAGGGGAACATCCCGGAGGAAACGCTGAGCGCCTGTGTCAAAGAGCTTATTGAGTCGTCGGATATTCCAGGGGTGGAGATTGCGATTTCCGACGTGCCGGAAATTATGCAGCACTTTTTGGACGTGTAG
- Protein Sequence
- MPRTYKRAENARGYQKYGEAALQKCLKAIQNGMTHRKASEMYGIPRTTITNRLQGKTGEKVGGRRAFTDEEEQLFVDCLVVMRDSGLAVNEHDLRFVVKSYLTEVGKTVPRFADNKPGPDWTKLFLGRHPELAFLETNRKGKGNIPEETLSACVKELIESSDIPGVEIAISDVPEIMQHFLDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00401625;
- 90% Identity
- iTF_00401625;
- 80% Identity
- -