Cpip007787.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- stc_1
- Assembly
- GCA_016801865.2
- Location
- NC:91883470-91924018[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 2.2e+04 -3.9 1.6 15 19 306 310 305 310 0.81 2 15 5.6e-05 0.73 10.4 20.6 3 19 352 368 338 368 0.86 3 15 2 2.6e+04 -4.5 0.9 6 10 394 398 394 398 0.94 4 15 2.8e-07 0.0036 17.8 11.8 1 18 404 421 404 422 0.92 5 15 0.59 7.7e+03 -2.4 0.7 6 10 452 456 451 456 0.89 6 15 2.3e-07 0.0029 18.1 11.7 1 18 462 479 462 480 0.96 7 15 1.6 2.1e+04 -3.8 0.4 6 10 511 515 511 517 0.86 8 15 0.00022 2.8 8.6 10.7 1 18 521 542 521 543 0.87 9 15 0.14 1.8e+03 -0.4 7.7 1 11 583 593 583 594 0.93 10 15 0.69 9e+03 -2.6 1.4 4 10 598 604 597 604 0.92 11 15 1.6e-07 0.0021 18.6 16.4 1 18 610 627 610 628 0.97 12 15 2 2.6e+04 -10.8 14.9 10 18 675 684 661 685 0.78 13 15 2.8e-05 0.36 11.4 12.2 1 16 721 736 721 744 0.89 14 15 3e-06 0.039 14.5 12.8 2 18 755 773 754 774 0.85 15 15 0.47 6.1e+03 -2.1 0.3 8 12 790 794 783 794 0.73
Sequence Information
- Coding Sequence
- ATGGCCAACGCCGGCGAAGGTTCCTCGTCCGGCAATGGACGCCAGCAAAATCACCAAAGCTTCGAGCAGTTCATCTCGCAGTTCAACAACCGGACTTCCATCCAACCGCAACAGGGCGGAGCAGGTTCGTCGTCCCACGTGGAGTCGTCCAGCTTGAAGCCGACCGCGGCCGAGTTTGTACCGCGCTGGCAGAACGAACCCGGCCAGCCGAGGGGTCAACCCCAGGAGAATGGTGGTGGCCGGGGTGGGAACGGTAACAACGGAGGAGTGCGCAGGCAGTACAACGAAGGAGGATCGCGGTGGAACAACGGAGGACGGAGGAATAACCGCGGgggtggcggcggcggtgacGATTACGGTAGGAATCGTCGCGGGCGGAACTTTAACGATTCCCGGGATGGTCCTCCGGAGGATGGAGGTGGGTTCTACGAGCAGGATAGGCCGCAACGGCAGCAGCGAAACCACCACCAACAGCAgcaacatcagcagcagcagcagagtaaCGGTGGTGGGAGATGGAAGGGAAACGCCGGAGGAGGAAGATTCCGGAATGGTGGTGGGGGAAGAGGTCCGAAGAATGAGAGGGAGCAGGGCCCGATGGGGAATGGAGGTGAGGAGAACCAGAGACAGGTGGAACCTGTGACGTCGGCGCCGGAACGAAAGGAACGTCGACCAAATGGTTATCAGCGGCAGCGTGCACGACAGGAAAAGTTGGAGGCCAACATCATCTCCAAGTGTTCGCAGCGCGAGAAGCTGATCCGTGAGCTGGACTCGTGCCGGGTCGAGTGTCTCGTGTGCTGCGAGCTCGTCCGTCCGACGCAGTCGGTTTGGTCCTGCCTCAACTGCTATCACATTCTTCACCTGAACTGCACCACCAAGTGGGCCAATTCGTCCCGGTCGGACGACGGTTGGCGCTGTCCGGCCTGTCAGAACGTGTCGAAGAAGATCCCGCGGGATTATTACTGCTTCTGTGGCAAGCAGAAGAACCCGCAGTACAACCGCAGTGACGTGGCCCACTCGTGCGGGGAACTGTGCGGCCGGGAAGATCTGTGCGAACATCCGTGCACGCTGCTTTGCCATCCGGGACCGTGTCCACCGTGTCAGGCGATGGTTCAGCGTAGCTGTGGGTGTGGTCGTACGACGAAGCCGCTGCAGTGCAGCCAAAAGGACGACATCGCGTGCGAAGCGATCTGCGCGAAACCGCTCAACTGCGAAATTCACACGTGCCAGCAAAAGTGCCACGTGGGCGACTGTGCCGAGTGTGGAGAAACGCTGGAACACGAGTGTCACTGTGGCAAGCAGAAGAAGCAGGTCACCTGCACGGTGTCCAACCTGGACAACACCCGGTTCAGCTGCGAGGCAGTTTGCGATGCCCAGCTGAGCTGTAACAATCACGCCTGTACCAAGGTGTGTCACGCAGGTCCCTGCGGAGAATGCGTCCTCTCGCCGACCCTGGTCACGTCCTGTCCCTGTGGCAAACAGGCCATCGTCAAGGGCGAACGCGAAAGCTGTCTGGATCCGATCCCGATCTGCAAAGCCGTCTGCGGCAAACAGCTCCCTTGCGGAAGTCCCGGCGCTCGTCACGTGTGCTCTGCCAAATGCCATCTGGACGAGTGCCCCCCTTGCAACAAGACCACAATGGTCAAGTGCCGCTGCGGCCACATGGACCAGCAAATCAAGTGCAAACAGCTGCAAACGCGAGCCGACGACGCTCGCTGCAAGAAACGCTGCACGCGGATGAGAAGCTGCGCCAAGCACAAATGCAACCAGGAATGCTGCATCGACTACGATCACATCTGCACCAAGACCTGCTCGCAAGCCCTCACCTGTGGCCGGCATCGCTGCGACAAACCGTGCCACCGCGGCTCGTGCAGCACCTGCCACCGGGTCTCCTTCGACGAACTGACCTGCGAGTGCGGCGCTGCCGTCATCTTCCCGCCGGTGCCTTGCGGAACGAGCAAACCTCCCTGCAACAAACCCTGCTCCCGCCAGCACCCCTGCTCCCACCCAGTCCTCCACAACTGTCACTCCGAACCCAACTGCCCGCCCTGTGTCGTCCTCACCACCCAGCACTGCTACGGCAAACACGAACAGCGCAAAACAATCCCCTGCTACCAAAGTTCCTTCAGCTGTGGCCTCGCCTGCGCCAAACCCCTCCCGTGTGGCCGCCACACGTGCATCAAACCGTGCCACGAAAACGGATGCCAAACCGCCGAGCACGAAGTGTGTCGCCAGAGTTGCACCAAAACGCGCACGACCTGCGCCCACCAGTGCAAGGCGCCGTGCCACGAGGGCGACTGTCCGCCGGATCTGCCCTGCCGGGAGATGGTCGAGGTGACGTGCGAGTGTGGCAACCGGAAGCAGATGCGCACGTGTCACGACTTTAGCAAAGAGTACCGCCGCATCACGTCGGCCCAGCTGGCCTCGTCGATGCAGGAAATGCAGCGCGGCGGATCGGTCGAGCTGAGCGACATCCTGGGCACGGGAAAGCCGAAGAGTAATAAGACCCTAGAATGCAACGACGAGTGCCGCACGCTGGAGCGCAACCGCCGGCTCGCCATCGGACTGCAGATCCGCAACCCGGACCTGTCGTCCAAGCTGCAGCCCAACTACTCCGAGTTCCTGCGGACGTACGCCAAAAAGGACCCCGCCCTGATCAAGATGATCCACGACCGGCTGAGCGAGCTGGTTAAGCTGGCCAAGGAGAGcaaacaccaaaaattaacacaCTCGTAA
- Protein Sequence
- MANAGEGSSSGNGRQQNHQSFEQFISQFNNRTSIQPQQGGAGSSSHVESSSLKPTAAEFVPRWQNEPGQPRGQPQENGGGRGGNGNNGGVRRQYNEGGSRWNNGGRRNNRGGGGGGDDYGRNRRGRNFNDSRDGPPEDGGGFYEQDRPQRQQRNHHQQQQHQQQQQSNGGGRWKGNAGGGRFRNGGGGRGPKNEREQGPMGNGGEENQRQVEPVTSAPERKERRPNGYQRQRARQEKLEANIISKCSQREKLIRELDSCRVECLVCCELVRPTQSVWSCLNCYHILHLNCTTKWANSSRSDDGWRCPACQNVSKKIPRDYYCFCGKQKNPQYNRSDVAHSCGELCGREDLCEHPCTLLCHPGPCPPCQAMVQRSCGCGRTTKPLQCSQKDDIACEAICAKPLNCEIHTCQQKCHVGDCAECGETLEHECHCGKQKKQVTCTVSNLDNTRFSCEAVCDAQLSCNNHACTKVCHAGPCGECVLSPTLVTSCPCGKQAIVKGERESCLDPIPICKAVCGKQLPCGSPGARHVCSAKCHLDECPPCNKTTMVKCRCGHMDQQIKCKQLQTRADDARCKKRCTRMRSCAKHKCNQECCIDYDHICTKTCSQALTCGRHRCDKPCHRGSCSTCHRVSFDELTCECGAAVIFPPVPCGTSKPPCNKPCSRQHPCSHPVLHNCHSEPNCPPCVVLTTQHCYGKHEQRKTIPCYQSSFSCGLACAKPLPCGRHTCIKPCHENGCQTAEHEVCRQSCTKTRTTCAHQCKAPCHEGDCPPDLPCREMVEVTCECGNRKQMRTCHDFSKEYRRITSAQLASSMQEMQRGGSVELSDILGTGKPKSNKTLECNDECRTLERNRRLAIGLQIRNPDLSSKLQPNYSEFLRTYAKKDPALIKMIHDRLSELVKLAKESKHQKLTHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402449;
- 90% Identity
- iTF_00402449;
- 80% Identity
- -