Cpip014918.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- nfxl1
- Assembly
- GCA_016801865.2
- Location
- NC:85536105-85539173[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.9 1.2e+04 -3.0 1.4 14 19 198 203 198 203 0.86 2 15 0.16 2e+03 -0.6 0.8 4 10 234 240 233 240 0.95 3 15 1.1e-07 0.0015 19.0 16.7 1 19 248 265 248 265 0.99 4 15 0.00014 1.9 9.1 12.8 1 19 301 320 301 320 0.95 5 15 4.5e-09 5.9e-05 23.5 14.2 1 19 355 373 355 373 0.99 6 15 1.8 2.3e+04 -3.9 0.8 6 10 398 402 397 404 0.54 7 15 6.4e-06 0.083 13.5 12.4 1 18 408 425 408 426 0.92 8 15 1.2e-06 0.016 15.8 18.4 1 18 460 477 460 478 0.98 9 15 6.4e-09 8.4e-05 23.0 15.9 1 18 487 504 487 505 0.97 10 15 0.058 7.6e+02 0.8 17.0 8 19 550 561 543 561 0.82 11 15 0.019 2.5e+02 2.3 4.9 1 12 573 583 573 583 0.89 12 15 0.00031 4 8.1 5.0 1 11 654 664 654 665 0.96 13 15 0.59 7.6e+03 -2.4 0.7 15 19 678 682 677 682 0.80 14 15 0.0068 88 3.8 19.0 1 19 693 710 693 710 0.93 15 15 2.2e-07 0.0029 18.1 12.0 1 16 761 775 761 781 0.88
Sequence Information
- Coding Sequence
- ATGTCCACCCGAAACCGACATCACCACAAAGGCAACGCGCAACCGGCCAACCCGTGGGGAAACAACGCGGGGTCGTCGGAtggccaacagcagcagcagccgaagGTGAAGAACGTCAAAACACCGGCAAACAGCGGTGGGCCGTCGAGTTCGCTGAAAAAGTCCGAGGAGAAGTTCGCTCAGGCCCACCAGAAGAACCTGGAAGCGGCCAAAAAGTACGCCTCCCAGCAGTCGTACGAATCCAGCGAGGATGAGGATGAGCGGGGTGGAAGTGATGGCGCGGCGCAGGACATTTTGGGATCGGTGCTGAAGAACTACGGAGGCGGTGGTGGGGATATTGGCAAGACCCAGGAGTACCTGCAGAACCTGCTGGAGTCCCGTTCGGCGGTGTGTTTGATCTGCATCGGCACGGTGAAGCGGGCGGACTCGATCTGGTCCTGCAAGAGTTGCTACACGTTCTTCCATCTGCTGTGCATTCAACGGTGGGCGAACGATAGCATTTCGCAGAAGCGAATCTCCCACGAACAGCAGGAAGGTTACTACAACAGTCGGGGCGAGTACATCCCGAAGCCGGCTTTGTCGGTGCATTGGGACTGTCCCAAGTGCCGCAAGGAGTACGAACCGGTGGACATTCCGCGCCACTACGAGTGCTTTTGCGCTAAGGAGTTGAACCCGGCGAATCACCTCTGGTTGATACCGCACTCGTGCGGCGAGACCTGTCGGAAGCGGCTAGTGCCGGACTGCGGCCACAACTGTGTTCTGCTGTGCCATCCGGGACCGTGTCCGCCGTGTCCGCAGACGGTCGTCGTGTCGTGCAAGTGTGGCCAGTCGAACGCGAAAACGATTCGTTGCTCGCAGCGATCCTGGACTTGTTTGAAGACGTGCAAGCTTAAACGGAACTGCGGAATTCACGAGTGTGGCGGTGTGTGCCACGCGGCGTCGGAGTGTCCTCCGTGTACGAGCCGGAGCAAGCAGAAGTGTGCGTGCGGATCGCGGACCAAAGAGGTGAATTGTTCCGAGTCGCGGTGGTCCTGTGGGAAGGTTTGCGGCAAGAAATATGCTTGTGGATTGCACAGCTGTGAGAAGGTTTGCCACGAAGGTGAGTGCGGCGAGTGTCCGCTGGGATTGCCTAGGACTTGTCCTTGTGGCAAAACTAGCTCCGTCGCGTCTTGCTCCGAGGACATTGGAACGTGCGGAGATACTTGCCAAAAGTACCTGGAATGTGAACAGCATCGCTGCAGCGAACGGTGTCACGTGGGAAAATGTGGGCAATGTTTGGAACTGGTTCGCAAGGCCTGCCGCTGTGGTTCCTTGAGCAAGGAAGTTGCCTGCCACAAAGTCCTGAACTGTGACCTAAAGTGCAAGAATGTACGAAGCTGCGGAAAACACCCCTGCAACCGGAAGTGCTGCGACGGCCAATGTCCACCGTGTGACAAAGTGTGCGGAAAAACGCTGCCCTGCGGCAAGCACAAGTGCAACTCACTCTGCCACCACGGACCGTGTTATCCCTGCAACCAGAAAGCAACCGTCAAGTGCAGATGTACGGGTACGACCCAGGAGGTTCCGTGCGGTCGCGAGAAGAAAATCGGCGCTCCAAAATGCCGACTTCCCTGTCGAATCCACTCCAAGTGTCACCACACGAACCCGCACCACTGCCACCAGGGCGATTGTCCGCCGTGCCAGAAGATATGTGACCTCCCCAATGATACCACCAACTGCTCGCATCCGTGCGCGGCCAAGTGTCACGACGCGGTCCGCGTAGTCACCaaagacaaaaacttcaaacccGTCGGTCCGTGGGACGTTCCGATGGAAATCGTCGAGATCAAGCAACTGCCGCATCCGCAGTGTCAAGTCCCAGTCCCAGTGACCTGCATCGGAGGTCACGAAACGGTGCAGTGGCCTTGTTACAACTCTAAACCGGCGTCCTGTGGGCGCGAGTGTGGCCGTGCCCTAAAGTGTGGCGTCCACACCTGTCCCCTCCAGTGTCACGCGTTCAAGAAACGCGATACAACCGAAGAAGACCCGAGGTGCCAGTCTTGCACGGCGGGTTGTCTGATCCCGCGTCCCGCGGGGTGTTCCCATCCGTGCAAGCGACCGTGTCATCCGCCGCCGTGCAATCCCTGCCAGGCGCCGACGAAGGTGGCCTGCCACTGCGGACTGACGCAGATCTTCTACAAGTGTCACGAGTTTTACAGCAGCGACAAGACGGAGCAGGAGTTGGTGGCGTTCCGCGAGGGAATTCTAAGCTGCGGGCAGAAGTGCATCAAAAATTTCTCCTGTGGCCATCGCTGCAACTCGACGTGCCACTCTGGCGACTGTCCGAACCCGgaagcgtgcaccaaaaaggtGAAAATCACCTGCGAATGCCGCCACCGGAGGCTGGAGGTGGCCTGCAGTGCGGCCCGTACCAACCCCCGGTCACTGGAGTGCGATGAAAGTTGCAAAACCGTAAAGGCAGCCAAGGAGCAGGTGCTGACCGAGCGCGAGCGCGCCCAAAAAGAGCAGGAGGAGGCGGAAAATCAACGCGAGTTGGAGGAGTATGAGAGGAAAGTTGGCGGCCGCAAGAAGCACCGCGAGCGCAAACGAGTTCAGGTGGAGGAGACCAAAGAAAGTAACTGGATGGTGATGGTGGCCGTTCCGGTTGGAGTGCTAGTGCTGGCCGTGattgtttatttcattttgttgcGTTAA
- Protein Sequence
- MSTRNRHHHKGNAQPANPWGNNAGSSDGQQQQQPKVKNVKTPANSGGPSSSLKKSEEKFAQAHQKNLEAAKKYASQQSYESSEDEDERGGSDGAAQDILGSVLKNYGGGGGDIGKTQEYLQNLLESRSAVCLICIGTVKRADSIWSCKSCYTFFHLLCIQRWANDSISQKRISHEQQEGYYNSRGEYIPKPALSVHWDCPKCRKEYEPVDIPRHYECFCAKELNPANHLWLIPHSCGETCRKRLVPDCGHNCVLLCHPGPCPPCPQTVVVSCKCGQSNAKTIRCSQRSWTCLKTCKLKRNCGIHECGGVCHAASECPPCTSRSKQKCACGSRTKEVNCSESRWSCGKVCGKKYACGLHSCEKVCHEGECGECPLGLPRTCPCGKTSSVASCSEDIGTCGDTCQKYLECEQHRCSERCHVGKCGQCLELVRKACRCGSLSKEVACHKVLNCDLKCKNVRSCGKHPCNRKCCDGQCPPCDKVCGKTLPCGKHKCNSLCHHGPCYPCNQKATVKCRCTGTTQEVPCGREKKIGAPKCRLPCRIHSKCHHTNPHHCHQGDCPPCQKICDLPNDTTNCSHPCAAKCHDAVRVVTKDKNFKPVGPWDVPMEIVEIKQLPHPQCQVPVPVTCIGGHETVQWPCYNSKPASCGRECGRALKCGVHTCPLQCHAFKKRDTTEEDPRCQSCTAGCLIPRPAGCSHPCKRPCHPPPCNPCQAPTKVACHCGLTQIFYKCHEFYSSDKTEQELVAFREGILSCGQKCIKNFSCGHRCNSTCHSGDCPNPEACTKKVKITCECRHRRLEVACSAARTNPRSLECDESCKTVKAAKEQVLTERERAQKEQEEAENQRELEEYERKVGGRKKHRERKRVQVEETKESNWMVMVAVPVGVLVLAVIVYFILLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402448;
- 90% Identity
- iTF_00402448;
- 80% Identity
- -