Cpip007957.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Culex pipiens
Gene Symbol
-
Assembly
GCA_016801865.2
Location
NC:96759854-96817600[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 1.2e-05 0.00036 21.3 4.9 1 23 311 333 311 333 0.98
2 30 5.7e-08 1.7e-06 28.6 3.3 1 23 339 361 339 361 0.98
3 30 4.5e-07 1.4e-05 25.8 4.6 1 23 367 389 367 389 0.98
4 30 4.3e-06 0.00013 22.7 5.7 1 23 395 417 395 417 0.99
5 30 2.5e-05 0.00077 20.3 3.5 1 23 423 445 423 445 0.99
6 30 7.4e-06 0.00023 22.0 5.6 1 23 451 473 451 473 0.98
7 30 2.5e-06 7.6e-05 23.5 4.7 1 23 479 501 479 501 0.99
8 30 3.3e-05 0.001 19.9 3.4 1 23 507 529 507 529 0.98
9 30 8.1e-05 0.0025 18.7 5.9 1 23 535 557 535 557 0.98
10 30 6.7e-05 0.002 19.0 7.1 1 23 563 585 563 585 0.98
11 30 4.6e-05 0.0014 19.5 3.0 1 23 591 613 591 613 0.98
12 30 1.7e-05 0.00052 20.8 6.1 1 23 619 641 619 641 0.98
13 30 1.2e-05 0.00036 21.3 3.9 1 23 647 669 647 669 0.98
14 30 4.1e-06 0.00012 22.8 5.0 1 23 675 697 675 697 0.98
15 30 2.1e-06 6.4e-05 23.7 5.9 1 23 703 725 703 725 0.98
16 30 0.00051 0.016 16.2 7.1 1 23 731 753 731 753 0.98
17 30 1.2e-05 0.00038 21.2 6.7 1 23 759 781 759 781 0.98
18 30 4.4e-05 0.0013 19.5 6.7 1 23 787 809 787 809 0.98
19 30 4.3e-06 0.00013 22.7 5.9 1 23 815 837 815 837 0.98
20 30 1.5e-05 0.00046 21.0 5.0 1 23 843 865 843 865 0.98
21 30 8.9e-06 0.00027 21.7 6.4 1 23 871 893 871 893 0.98
22 30 0.00049 0.015 16.2 6.7 1 23 899 921 899 921 0.98
23 30 2.9e-05 0.0009 20.1 5.4 1 23 927 949 927 949 0.98
24 30 1.4e-07 4.3e-06 27.4 4.6 1 23 955 977 955 977 0.99
25 30 2.9e-07 8.8e-06 26.4 5.0 1 23 983 1005 983 1005 0.98
26 30 1.8e-06 5.6e-05 23.9 7.7 1 23 1011 1033 1011 1033 0.98
27 30 0.00012 0.0036 18.2 8.0 1 23 1039 1062 1039 1062 0.95
28 30 0.0001 0.0031 18.4 0.6 1 23 1068 1090 1068 1090 0.98
29 30 0.011 0.33 12.0 3.8 1 23 1100 1122 1100 1122 0.99
30 30 0.0039 0.12 13.4 4.3 1 23 1128 1151 1128 1151 0.96

Sequence Information

Coding Sequence
ATGAATAAGTTTTGGGTGCTGACCAATTTGATCCAAAATTCAAACGTATATCCAATACCTAAAGTTGAGCATCCGCACCACCAGCAGTCGGATCAGCAGCAAcacccgcagcagcagcagccgcaccAGCAGCCACCTCCGTCCCATCAGCCAGCGTCGTCGACGACGTCGTCCAAGGGCGGAGGGAGTCGGCATCCCGCGAACCATGCAATAGGACCGGCTGCGCCGGGAATCTACCACAATCCCAGTGGCGTTCCGGGGCCGACAGCGCCCGGTGCGAGCTCGGCGCCAACTGTACCCACATCGGCCATAGGATCGCCACATCTTACGAATCTTTCCGGACCAGCTGCGGCGAACGCACACAGTGGCAGAGGAAGCACGGGCCATGCACCGGCACCGCCCGGGGCCCACCTGCAGCTGAACGGGACGGTCTCGTCGGACCACACAAAGGCACAGTATTTAGGCAACATGCAGGTGCACCCGGCCCACGCCACCAGCGGTCACCATGCGCCACCAACGGCCACCCAAGGGGGCCCACCGCAGTCCGCCCATCCTCCCCAGCCGATCTCGATCGTCAAGCCGGAGTTCAAGGTGCCGTCGATACCGACCCACCTGATGGACGTGCGCGGCCCGGACGGGTCGATCGTCAAGATCAACATGCCCGAGCATCACGACCCGAGCAAGCCGCCCAACAACGTCGAAATGTTGAAAGTCAACATCGAGGATCTCAGTCAATTTCTCTCGTACCATGAAGTCTTCGGAAAGCTACCTTCCGACATGCTAACGGGTCCGTCCGCTAGCCTAGTGCCATCATCCGCTACCAACACTGCGTCCACCAGCGGTGGCCACAGTAACGGTAAACTGAACCACATCCGgggcagcagtagcagcagcagcggcagccaGCAGCATCCGCAGGGTGAGTCCCCGTTCAAGTGCAGCTACTGCGCCAAGAGCTTCACCCGGAAGGAGCACCTGACGAACCACGTGCGCCAGCACACCGGCGAGTCGCCGTACCGCTGCCCGTACTGTGGCAAAACGTTCACCCGCAAGGAACACCTCACGAACCACGTCAGATTGCACACCGGTGAAACTCCCTACCAGTGCACCTACTGCGGGAAGAAGTTCACCCGAAAAGAACACCTCACCAACCATGTCAGGTTACACACCGGAGAGACCCCGTTCCAGTGTACGTACTGCGAGAAGAAGTTCACGCGAAAAGAACACTTGACAAACCACACGAGAATACACACTGGAGAGACTCCCTATCAGTGCACGTATTGCGAGAAGAAGTTCACCAGAAAGGAACGCTTGACGTACCACATAAGGTTACACACCGGCGAGACGCCCTTCCAGTGCTCGTACTGTCAGAAGAAGTTTACCCGCAAAGAGCATTTAACGAATCACGTCAGATTACATACTGGAGAGACCCCCTTTCAGTGTACCTATTGCGAAAAGAAATTCACGCGCAAAGAGCATTTAACGAACCATGTCAGAATACACACTGGCGAGACTCCGTACCGGTGCACGTATTGTGAGAAGAAATTTACCAGAAAAGAGCGTTTAACGTATCACATAAGATGGCATACCGGAGAGACTCCCTATCATTGCACATATTGCGAGAAAAAATTCGCACGAAAAGAACATTTAACGAATCATGTCAGATTGCACACCGGTGAGACGCCCTATCACTGTACCTATTGTGAGAAAAAATTTACCCGCAAAGAGCATTTAACGAACCATGTCAGATTGCACACTGGAGAGACTCCCTATCAGTGCACATATTGCGAGAAGAAATTCAGTAGAAGAGAGCGTTTAACGATTCACACAAGATTACACACCGGTGAAACCCCGTACCATTGCACTTACTGTTCGAAGAAGTTTGCTCGCAAAGAACATCTCACGAACCATATCAGAATACACACCGGAGAGACCCCCTATCGGTGCACATATTGTGATAAGAAATTTACCAGAAAAGAGCGTTTAACGTATCACATAAGACTACACACCGGCGAGACCCCCTATCAGTGTACCTATTGCGAGAAAAAGTTCACGCGAAAAGAGCATTTAACGAATCATGTCAGATTGCACACCGGAGAGACCCCTTACCAGTGCACGTACTGTGACAAAAAATTCACGCGAAAAGAGCATTTAACCAACCACACAAGATTGCACACTGGAGAGACCCCCTATCATTGCACCTATTGTGAGAAGAAATTTATGCGAAAAGAACACTTGAAAAACCACGTCAGATTGCATACCGGAGAAACTCCCTTTCAATGTACGTACTGCCAGAAGAAGTTTACGCGTAAAGAGCATTTAACCAATCACACCAGATTACACACCGGTGAAACGCCGTACCATTGCACTTACTGTACGAAGAAGTTTGCTCGCAAAGAACATCTCACGAACCACATCAGATTACACACCGGCGAGACGCCGTACCAGTGTACGTACTGTTCCAAGAAGTTCACTCGCAAAGAACATCTCACGAACCATCTCAGACTGCACACCGGGGAAACTCCTTACCAGTGTAACTTTTGCGAAAAGAAGTTCACCAGAAAAGAACACCTCACGAACCACGTCAGATTGCACACGGGCGAGACTCCCTATCAGTGCTCGTATTGCCAGAAGAAGTTTACCAGAAAAGAGCATTTGACGAATCACACCAGGCTGCACACTGGCGAGACGCCCTATCATTGCACCTATTGCGAGAAGAAATTTATGCGCAAAGAGCATTTAACGAACCATGTCAGATTACACACTGGCGAGACTCCCTACCATTGTACCTACTGCCCGAAGAAGTTCGCTCGCAAAGAACACCTCACGAACCATGTCAGATTGCACACCGGAGAAACTCCCTATCAGTGCACGTACTGTGGGAAGAAATTCACCCGAAAAGAGCATTTAACCAATCACATCAGATTGCATACCGGAGAGTCTCCGTACCGGTGTGAGTACTGTAACAAGTCCTTTACCCGCAAAGAACACCTCAAGAATCACATCAGGCTGCACACCGGAGATTCGCCGCACAAATGCGAGTACTGCAACAAGACGTTCACGCGCAAGGAGCACCTCAACAACCACATGCGCCAGCACAGCGGGGACAACCCGCACTGCTGCAACGTGTGCAACAAGACGTTTACCAGGAAGGAGCACCTGATTAACCATATGAGCCGGTCTCATACCGGAGAGCGTCCGTTCCAGTGCGATGAGTGCGGCAAGTCGTTCCCGCTCAAGGGCAACCTGCTGTTCCACCAGCGCAGCCACACCAAGGGCCAACCGATGGAGCGACCGTTCCGGTGCGACATGTGCCCGAAGGACTTCATCTGCAAGGGCCACCTGGTGTCGCACCAGCGGTCCCACACCGGCGAGAAGAACCACCACTGTCCGCAGTGCAGCAAGTCGTACGTCGAGCGGGGCAACATGCTGCGGCACATGAAGAAGACCCACCCGGACGCGGTGATCCCGGTGCTGCCGAAGCTGCCCCACATCAAGGTCGAGCCCAAGTCCGGGGAGTACTtagtAGTAGCTCAGCCGGTGGTGACGTCCCCGGTGCAGGCCACCTCCTCCACGATCACCTCGATCATCTCGAATAGTCATCCATCGCAGCACAACCATCACATTCAACCGAAAATGGAACAGAAATCTCAGATACACCATCTTACGCTTCCCCATCAGCATCAGGCTCACCAGCTGCACCACCACATCTCATCGGGGGCGGCCCCGCCGATGCACCTGCCACCGCCAAACCCCCAACAATTGGCAGCGCTCGCCCTCCATCATCAGGtggcccagcagcagcagcagcaacaaccacaacaacaaTCCTCACCCTCAACGGGCCGAGCACAGCCTTCTCCTCGTACATCACAtcagccgcagcagcagcagccgctgCCGCTGGCGCAGGTCCAACAGCCGGGGCCCCAGGTGGTCCCCCCGGTGGTGGTGCCGGTCCAGGTGCAGGTCCCCCAGGAAAACCCCCAACagtcacagcagcagcagcagcagcagccggccCAGGGCCCAACTGGACCCCTGCCACCACAACACCATACGGTCCCGGTTACTATTATAACCCACGCTGGCACAATTAATCCCCTAACCGTGGCGGACGGACTGCAGAACCGGGCTAGTGCGGCCACCATCGGAACCACCATCCAGATGCACCACCTGACTGCGGCCGCCCAGTCGGACGAGCACTCGGTCGTTTACTGA
Protein Sequence
MNKFWVLTNLIQNSNVYPIPKVEHPHHQQSDQQQHPQQQQPHQQPPPSHQPASSTTSSKGGGSRHPANHAIGPAAPGIYHNPSGVPGPTAPGASSAPTVPTSAIGSPHLTNLSGPAAANAHSGRGSTGHAPAPPGAHLQLNGTVSSDHTKAQYLGNMQVHPAHATSGHHAPPTATQGGPPQSAHPPQPISIVKPEFKVPSIPTHLMDVRGPDGSIVKINMPEHHDPSKPPNNVEMLKVNIEDLSQFLSYHEVFGKLPSDMLTGPSASLVPSSATNTASTSGGHSNGKLNHIRGSSSSSSGSQQHPQGESPFKCSYCAKSFTRKEHLTNHVRQHTGESPYRCPYCGKTFTRKEHLTNHVRLHTGETPYQCTYCGKKFTRKEHLTNHVRLHTGETPFQCTYCEKKFTRKEHLTNHTRIHTGETPYQCTYCEKKFTRKERLTYHIRLHTGETPFQCSYCQKKFTRKEHLTNHVRLHTGETPFQCTYCEKKFTRKEHLTNHVRIHTGETPYRCTYCEKKFTRKERLTYHIRWHTGETPYHCTYCEKKFARKEHLTNHVRLHTGETPYHCTYCEKKFTRKEHLTNHVRLHTGETPYQCTYCEKKFSRRERLTIHTRLHTGETPYHCTYCSKKFARKEHLTNHIRIHTGETPYRCTYCDKKFTRKERLTYHIRLHTGETPYQCTYCEKKFTRKEHLTNHVRLHTGETPYQCTYCDKKFTRKEHLTNHTRLHTGETPYHCTYCEKKFMRKEHLKNHVRLHTGETPFQCTYCQKKFTRKEHLTNHTRLHTGETPYHCTYCTKKFARKEHLTNHIRLHTGETPYQCTYCSKKFTRKEHLTNHLRLHTGETPYQCNFCEKKFTRKEHLTNHVRLHTGETPYQCSYCQKKFTRKEHLTNHTRLHTGETPYHCTYCEKKFMRKEHLTNHVRLHTGETPYHCTYCPKKFARKEHLTNHVRLHTGETPYQCTYCGKKFTRKEHLTNHIRLHTGESPYRCEYCNKSFTRKEHLKNHIRLHTGDSPHKCEYCNKTFTRKEHLNNHMRQHSGDNPHCCNVCNKTFTRKEHLINHMSRSHTGERPFQCDECGKSFPLKGNLLFHQRSHTKGQPMERPFRCDMCPKDFICKGHLVSHQRSHTGEKNHHCPQCSKSYVERGNMLRHMKKTHPDAVIPVLPKLPHIKVEPKSGEYLVVAQPVVTSPVQATSSTITSIISNSHPSQHNHHIQPKMEQKSQIHHLTLPHQHQAHQLHHHISSGAAPPMHLPPPNPQQLAALALHHQVAQQQQQQQPQQQSSPSTGRAQPSPRTSHQPQQQQPLPLAQVQQPGPQVVPPVVVPVQVQVPQENPQQSQQQQQQQPAQGPTGPLPPQHHTVPVTIITHAGTINPLTVADGLQNRASAATIGTTIQMHHLTAAAQSDEHSVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00401901;
90% Identity
iTF_00401901;
80% Identity
iTF_00400778;