Basic Information

Insect: Culex pipiens
Gene Symbol: -
Assembly: GCA_016801865.2
Location: NC:96759854-96817600[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.014 5.3 7.7 1.5 17 38 311 333 302 335 0.85

2 28 0.0068 2.5 8.7 2.2 9 33 332 356 328 362 0.72

3 28 0.0028 1 9.9 2.7 6 33 357 384 356 390 0.77

4 28 0.0046 1.7 9.2 2.5 6 33 385 412 384 417 0.78

5 28 0.003 1.1 9.8 1.9 8 40 415 443 412 446 0.80

6 28 0.018 6.5 7.4 2.7 13 33 447 468 440 473 0.75

7 28 0.0046 1.7 9.2 2.8 6 33 469 496 468 501 0.78

8 28 0.001 0.37 11.3 2.1 5 40 496 527 494 530 0.87

9 28 0.019 6.9 7.3 1.4 18 33 536 552 528 557 0.79

10 28 0.015 5.5 7.6 3.2 6 33 553 580 550 586 0.77

11 28 0.0045 1.7 9.3 1.2 6 30 581 606 578 614 0.79

12 28 0.11 42 4.8 3.2 15 35 617 638 607 642 0.76

13 28 0.0092 3.4 8.3 2.3 6 40 637 667 636 670 0.81

14 28 0.0099 3.7 8.2 2.9 13 33 671 692 664 697 0.75

15 28 0.011 4.2 8.0 2.1 6 33 693 720 692 726 0.77

16 28 0.22 83 3.8 2.3 14 35 728 746 720 751 0.71

17 28 0.0019 0.7 10.5 2.3 3 33 746 776 744 782 0.83

18 28 0.21 76 4.0 4.4 13 35 783 806 773 810 0.74

19 28 0.012 4.5 7.9 4.6 13 38 811 837 804 838 0.81

20 28 0.0038 1.4 9.5 2.3 14 33 840 860 833 866 0.77

21 28 0.0084 3.1 8.4 2.5 6 33 861 888 858 894 0.78

22 28 0.091 34 5.1 2.6 14 33 896 916 888 922 0.75

23 28 0.055 20 5.8 1.4 6 33 917 944 916 949 0.75

24 28 0.0041 1.5 9.4 4.0 5 35 944 974 941 978 0.78

25 28 0.15 54 4.4 4.3 17 39 983 1002 972 1006 0.75

26 28 0.12 43 4.8 7.5 9 38 1004 1033 997 1034 0.73

27 28 0.076 28 5.3 6.1 19 43 1041 1062 1036 1063 0.93

28 28 1.9 7e+02 0.9 5.2 14 44 1125 1152 1116 1152 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.014	5.3	7.7	1.5	17	38	311	333	302	335	0.85
2	28	0.0068	2.5	8.7	2.2	9	33	332	356	328	362	0.72
3	28	0.0028	1	9.9	2.7	6	33	357	384	356	390	0.77
4	28	0.0046	1.7	9.2	2.5	6	33	385	412	384	417	0.78
5	28	0.003	1.1	9.8	1.9	8	40	415	443	412	446	0.80
6	28	0.018	6.5	7.4	2.7	13	33	447	468	440	473	0.75
7	28	0.0046	1.7	9.2	2.8	6	33	469	496	468	501	0.78
8	28	0.001	0.37	11.3	2.1	5	40	496	527	494	530	0.87
9	28	0.019	6.9	7.3	1.4	18	33	536	552	528	557	0.79
10	28	0.015	5.5	7.6	3.2	6	33	553	580	550	586	0.77
11	28	0.0045	1.7	9.3	1.2	6	30	581	606	578	614	0.79
12	28	0.11	42	4.8	3.2	15	35	617	638	607	642	0.76
13	28	0.0092	3.4	8.3	2.3	6	40	637	667	636	670	0.81
14	28	0.0099	3.7	8.2	2.9	13	33	671	692	664	697	0.75
15	28	0.011	4.2	8.0	2.1	6	33	693	720	692	726	0.77
16	28	0.22	83	3.8	2.3	14	35	728	746	720	751	0.71
17	28	0.0019	0.7	10.5	2.3	3	33	746	776	744	782	0.83
18	28	0.21	76	4.0	4.4	13	35	783	806	773	810	0.74
19	28	0.012	4.5	7.9	4.6	13	38	811	837	804	838	0.81
20	28	0.0038	1.4	9.5	2.3	14	33	840	860	833	866	0.77
21	28	0.0084	3.1	8.4	2.5	6	33	861	888	858	894	0.78
22	28	0.091	34	5.1	2.6	14	33	896	916	888	922	0.75
23	28	0.055	20	5.8	1.4	6	33	917	944	916	949	0.75
24	28	0.0041	1.5	9.4	4.0	5	35	944	974	941	978	0.78
25	28	0.15	54	4.4	4.3	17	39	983	1002	972	1006	0.75
26	28	0.12	43	4.8	7.5	9	38	1004	1033	997	1034	0.73
27	28	0.076	28	5.3	6.1	19	43	1041	1062	1036	1063	0.93
28	28	1.9	7e+02	0.9	5.2	14	44	1125	1152	1116	1152	0.83

Sequence Information

Coding Sequence: ATGAATAAGTTTTGGGTGCTGACCAATTTGATCCAAAATTCAAACGTATATCCAATACCTAAAGTTGAGCATCCGCACCACCAGCAGTCGGATCAGCAGCAAcacccgcagcagcagcagccgcaccAGCAGCCACCTCCGTCCCATCAGCCAGCGTCGTCGACGACGTCGTCCAAGGGCGGAGGGAGTCGGCATCCCGCGAACCATGCAATAGGACCGGCTGCGCCGGGAATCTACCACAATCCCAGTGGCGTTCCGGGGCCGACAGCGCCCGGTGCGAGCTCGGCGCCAACTGTACCCACATCGGCCATAGGATCGCCACATCTTACGAATCTTTCCGGACCAGCTGCGGCGAACGCACACAGTGGCAGAGGAAGCACGGGCCATGCACCGGCACCGCCCGGGGCCCACCTGCAGCTGAACGGGACGGTCTCGTCGGACCACACAAAGGCACAGTATTTAGGCAACATGCAGGTGCACCCGGCCCACGCCACCAGCGGTCACCATGCGCCACCAACGGCCACCCAAGGGGGCCCACCGCAGTCCGCCCATCCTCCCCAGCCGATCTCGATCGTCAAGCCGGAGTTCAAGGTGCCGTCGATACCGACCCACCTGATGGACGTGCGCGGCCCGGACGGGTCGATCGTCAAGATCAACATGCCCGAGCATCACGACCCGAGCAAGCCGCCCAACAACGTCGAAATGTTGAAAGTCAACATCGAGGATCTCAGTCAATTTCTCTCGTACCATGAAGTCTTCGGAAAGCTACCTTCCGACATGCTAACGGGTCCGTCCGCTAGCCTAGTGCCATCATCCGCTACCAACACTGCGTCCACCAGCGGTGGCCACAGTAACGGTAAACTGAACCACATCCGgggcagcagtagcagcagcagcggcagccaGCAGCATCCGCAGGGTGAGTCCCCGTTCAAGTGCAGCTACTGCGCCAAGAGCTTCACCCGGAAGGAGCACCTGACGAACCACGTGCGCCAGCACACCGGCGAGTCGCCGTACCGCTGCCCGTACTGTGGCAAAACGTTCACCCGCAAGGAACACCTCACGAACCACGTCAGATTGCACACCGGTGAAACTCCCTACCAGTGCACCTACTGCGGGAAGAAGTTCACCCGAAAAGAACACCTCACCAACCATGTCAGGTTACACACCGGAGAGACCCCGTTCCAGTGTACGTACTGCGAGAAGAAGTTCACGCGAAAAGAACACTTGACAAACCACACGAGAATACACACTGGAGAGACTCCCTATCAGTGCACGTATTGCGAGAAGAAGTTCACCAGAAAGGAACGCTTGACGTACCACATAAGGTTACACACCGGCGAGACGCCCTTCCAGTGCTCGTACTGTCAGAAGAAGTTTACCCGCAAAGAGCATTTAACGAATCACGTCAGATTACATACTGGAGAGACCCCCTTTCAGTGTACCTATTGCGAAAAGAAATTCACGCGCAAAGAGCATTTAACGAACCATGTCAGAATACACACTGGCGAGACTCCGTACCGGTGCACGTATTGTGAGAAGAAATTTACCAGAAAAGAGCGTTTAACGTATCACATAAGATGGCATACCGGAGAGACTCCCTATCATTGCACATATTGCGAGAAAAAATTCGCACGAAAAGAACATTTAACGAATCATGTCAGATTGCACACCGGTGAGACGCCCTATCACTGTACCTATTGTGAGAAAAAATTTACCCGCAAAGAGCATTTAACGAACCATGTCAGATTGCACACTGGAGAGACTCCCTATCAGTGCACATATTGCGAGAAGAAATTCAGTAGAAGAGAGCGTTTAACGATTCACACAAGATTACACACCGGTGAAACCCCGTACCATTGCACTTACTGTTCGAAGAAGTTTGCTCGCAAAGAACATCTCACGAACCATATCAGAATACACACCGGAGAGACCCCCTATCGGTGCACATATTGTGATAAGAAATTTACCAGAAAAGAGCGTTTAACGTATCACATAAGACTACACACCGGCGAGACCCCCTATCAGTGTACCTATTGCGAGAAAAAGTTCACGCGAAAAGAGCATTTAACGAATCATGTCAGATTGCACACCGGAGAGACCCCTTACCAGTGCACGTACTGTGACAAAAAATTCACGCGAAAAGAGCATTTAACCAACCACACAAGATTGCACACTGGAGAGACCCCCTATCATTGCACCTATTGTGAGAAGAAATTTATGCGAAAAGAACACTTGAAAAACCACGTCAGATTGCATACCGGAGAAACTCCCTTTCAATGTACGTACTGCCAGAAGAAGTTTACGCGTAAAGAGCATTTAACCAATCACACCAGATTACACACCGGTGAAACGCCGTACCATTGCACTTACTGTACGAAGAAGTTTGCTCGCAAAGAACATCTCACGAACCACATCAGATTACACACCGGCGAGACGCCGTACCAGTGTACGTACTGTTCCAAGAAGTTCACTCGCAAAGAACATCTCACGAACCATCTCAGACTGCACACCGGGGAAACTCCTTACCAGTGTAACTTTTGCGAAAAGAAGTTCACCAGAAAAGAACACCTCACGAACCACGTCAGATTGCACACGGGCGAGACTCCCTATCAGTGCTCGTATTGCCAGAAGAAGTTTACCAGAAAAGAGCATTTGACGAATCACACCAGGCTGCACACTGGCGAGACGCCCTATCATTGCACCTATTGCGAGAAGAAATTTATGCGCAAAGAGCATTTAACGAACCATGTCAGATTACACACTGGCGAGACTCCCTACCATTGTACCTACTGCCCGAAGAAGTTCGCTCGCAAAGAACACCTCACGAACCATGTCAGATTGCACACCGGAGAAACTCCCTATCAGTGCACGTACTGTGGGAAGAAATTCACCCGAAAAGAGCATTTAACCAATCACATCAGATTGCATACCGGAGAGTCTCCGTACCGGTGTGAGTACTGTAACAAGTCCTTTACCCGCAAAGAACACCTCAAGAATCACATCAGGCTGCACACCGGAGATTCGCCGCACAAATGCGAGTACTGCAACAAGACGTTCACGCGCAAGGAGCACCTCAACAACCACATGCGCCAGCACAGCGGGGACAACCCGCACTGCTGCAACGTGTGCAACAAGACGTTTACCAGGAAGGAGCACCTGATTAACCATATGAGCCGGTCTCATACCGGAGAGCGTCCGTTCCAGTGCGATGAGTGCGGCAAGTCGTTCCCGCTCAAGGGCAACCTGCTGTTCCACCAGCGCAGCCACACCAAGGGCCAACCGATGGAGCGACCGTTCCGGTGCGACATGTGCCCGAAGGACTTCATCTGCAAGGGCCACCTGGTGTCGCACCAGCGGTCCCACACCGGCGAGAAGAACCACCACTGTCCGCAGTGCAGCAAGTCGTACGTCGAGCGGGGCAACATGCTGCGGCACATGAAGAAGACCCACCCGGACGCGGTGATCCCGGTGCTGCCGAAGCTGCCCCACATCAAGGTCGAGCCCAAGTCCGGGGAGTACTtagtAGTAGCTCAGCCGGTGGTGACGTCCCCGGTGCAGGCCACCTCCTCCACGATCACCTCGATCATCTCGAATAGTCATCCATCGCAGCACAACCATCACATTCAACCGAAAATGGAACAGAAATCTCAGATACACCATCTTACGCTTCCCCATCAGCATCAGGCTCACCAGCTGCACCACCACATCTCATCGGGGGCGGCCCCGCCGATGCACCTGCCACCGCCAAACCCCCAACAATTGGCAGCGCTCGCCCTCCATCATCAGGtggcccagcagcagcagcagcaacaaccacaacaacaaTCCTCACCCTCAACGGGCCGAGCACAGCCTTCTCCTCGTACATCACAtcagccgcagcagcagcagccgctgCCGCTGGCGCAGGTCCAACAGCCGGGGCCCCAGGTGGTCCCCCCGGTGGTGGTGCCGGTCCAGGTGCAGGTCCCCCAGGAAAACCCCCAACagtcacagcagcagcagcagcagcagccggccCAGGGCCCAACTGGACCCCTGCCACCACAACACCATACGGTCCCGGTTACTATTATAACCCACGCTGGCACAATTAATCCCCTAACCGTGGCGGACGGACTGCAGAACCGGGCTAGTGCGGCCACCATCGGAACCACCATCCAGATGCACCACCTGACTGCGGCCGCCCAGTCGGACGAGCACTCGGTCGTTTACTGA
Protein Sequence: MNKFWVLTNLIQNSNVYPIPKVEHPHHQQSDQQQHPQQQQPHQQPPPSHQPASSTTSSKGGGSRHPANHAIGPAAPGIYHNPSGVPGPTAPGASSAPTVPTSAIGSPHLTNLSGPAAANAHSGRGSTGHAPAPPGAHLQLNGTVSSDHTKAQYLGNMQVHPAHATSGHHAPPTATQGGPPQSAHPPQPISIVKPEFKVPSIPTHLMDVRGPDGSIVKINMPEHHDPSKPPNNVEMLKVNIEDLSQFLSYHEVFGKLPSDMLTGPSASLVPSSATNTASTSGGHSNGKLNHIRGSSSSSSGSQQHPQGESPFKCSYCAKSFTRKEHLTNHVRQHTGESPYRCPYCGKTFTRKEHLTNHVRLHTGETPYQCTYCGKKFTRKEHLTNHVRLHTGETPFQCTYCEKKFTRKEHLTNHTRIHTGETPYQCTYCEKKFTRKERLTYHIRLHTGETPFQCSYCQKKFTRKEHLTNHVRLHTGETPFQCTYCEKKFTRKEHLTNHVRIHTGETPYRCTYCEKKFTRKERLTYHIRWHTGETPYHCTYCEKKFARKEHLTNHVRLHTGETPYHCTYCEKKFTRKEHLTNHVRLHTGETPYQCTYCEKKFSRRERLTIHTRLHTGETPYHCTYCSKKFARKEHLTNHIRIHTGETPYRCTYCDKKFTRKERLTYHIRLHTGETPYQCTYCEKKFTRKEHLTNHVRLHTGETPYQCTYCDKKFTRKEHLTNHTRLHTGETPYHCTYCEKKFMRKEHLKNHVRLHTGETPFQCTYCQKKFTRKEHLTNHTRLHTGETPYHCTYCTKKFARKEHLTNHIRLHTGETPYQCTYCSKKFTRKEHLTNHLRLHTGETPYQCNFCEKKFTRKEHLTNHVRLHTGETPYQCSYCQKKFTRKEHLTNHTRLHTGETPYHCTYCEKKFMRKEHLTNHVRLHTGETPYHCTYCPKKFARKEHLTNHVRLHTGETPYQCTYCGKKFTRKEHLTNHIRLHTGESPYRCEYCNKSFTRKEHLKNHIRLHTGDSPHKCEYCNKTFTRKEHLNNHMRQHSGDNPHCCNVCNKTFTRKEHLINHMSRSHTGERPFQCDECGKSFPLKGNLLFHQRSHTKGQPMERPFRCDMCPKDFICKGHLVSHQRSHTGEKNHHCPQCSKSYVERGNMLRHMKKTHPDAVIPVLPKLPHIKVEPKSGEYLVVAQPVVTSPVQATSSTITSIISNSHPSQHNHHIQPKMEQKSQIHHLTLPHQHQAHQLHHHISSGAAPPMHLPPPNPQQLAALALHHQVAQQQQQQQPQQQSSPSTGRAQPSPRTSHQPQQQQPLPLAQVQQPGPQVVPPVVVPVQVQVPQENPQQSQQQQQQQPAQGPTGPLPPQHHTVPVTIITHAGTINPLTVADGLQNRASAATIGTTIQMHHLTAAAQSDEHSVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00401901;
90% Identity: iTF_00401901;
80% Identity: iTF_00400792;